Gene TDE0352 details

Gene Information

• Locus tag: TDE0352
• Symbol: rpiB
• ID: 2740159
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 396347
• End bp: 396799
• Gene Length: 453 bp
• Protein Length: 150 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 637159224
• Product: ribose 5-phosphate isomerase B
• Protein accession: NP_970966
• Protein GI: 42525868
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0698] Ribose 5-phosphate isomerase RpiB
• TIGRFAM ID: [TIGR00689] sugar-phosphate isomerases, RpiB/LacA/LacB family; [TIGR01120] ribose 5-phosphate isomerase B

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATCG GATTTGGAAG CGATCATTCG GGAGTCGCAT TAAAACATAT TTTAATGGAA 
CACGTTCGCA ATAAAGGATA CGAATGCGTT GATTACGGTG CGGCGGATTC GAAGGTTCCG 
GCAAACTATG CCGAATTCGG CTTAAAGGTT GCCGAAGCGA TTAAATCGCA GGAAGTTGAA 
AAAGGCGTTA TGGTGTGCGG ATCGGGCGTC GGCATTTCTC TTGCCGCAAA CAAGGTTCCG 
GGAGTGAGGG CTGCGGCGTG CAGCGAACCG TGTACGGCAA AGCTCGCCGT CGAACACAGC 
GACATAAACG CTGTCGCCAT GGGCGTATGC ATCGTCGGAC CCGAAGAAGC AAAAATGATT 
GTCGACGCCT TTCTCGATGC CCGCTTTGAA GGCGGCGTTT ACACGGAACG GGTCGACACC 
CTTTCCGCTA TAGAAAGAAA ATACGGTAAA TAA 

 

Protein sequence

MKIGFGSDHS GVALKHILME HVRNKGYECV DYGAADSKVP ANYAEFGLKV AEAIKSQEVE 
KGVMVCGSGV GISLAANKVP GVRAAACSEP CTAKLAVEHS DINAVAMGVC IVGPEEAKMI 
VDAFLDARFE GGVYTERVDT LSAIERKYGK