Gene TDE0306 details

Gene Information

• Locus tag: TDE0306
• Symbol: sppA
• ID: 2741027
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 336880
• End bp: 338709
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637159178
• Product: signal peptide peptidase SppA
• Protein accession: NP_970920
• Protein GI: 42525822
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0616] Periplasmic serine proteases (ClpP class)
• TIGRFAM ID: [TIGR00705] signal peptide peptidase SppA, 67K type; [TIGR00706] signal peptide peptidase SppA, 36K type

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0000532675
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGGAAA ACCAAGAACA AAAAAAGCGT CCGGGTTGTT TTATGGCGTT TTTTCGTGGA 
ATAAATATTT TACGTTTGAT AATAATAAAC ATCATTTTCT TCTTTTTCTT TTTTTCATTT 
TTGGGGGTTA TGGGCAGCAT ACCCTCTAAC ACAAAAACAG TAGAGCGCGT ACCGAGTGAG 
GCTGTACTAA TGATAAATCC TTCCGGAGTT CTTACAGAAA AGGAATCGGA TATTTTTTCG 
GCCGGCATTC CCGCAATCGG GAAAAAATCG GCAGTCCTCG TTTCAGACCT TGTAAAAGCT 
ATAAAAAATG CGGCCTTCGA TAGACGGATA ACAAGCCTTT ATTTGGACTT CTCGGAATTG 
GGAGGCCTCT CGTCAGGACA CTTAAGTGAA CTGGGAGACG CTTTAAAAGT CTTTAAAAAT 
TCCGGTAAGA AAATATATGC CTATGCTGTA GGCTATTCCA TTCCTTCTTA CTTTTTAGCT 
TCCTATGCAG ACCGAATAGG AATTGATCCG CTGGGAGAAG TCTCCTTTGC GGGCTTTGCT 
TCCCGTCCGG TCTTTTTTAA AGGTTTGGAA GAAAAATTCG GCATCAAGTG GAATGTGATA 
CAGGCCGGAA CCTACAAAGG TATGGCAGAA ACTTATTCGA GGGATAATCT TTCGCAAAAT 
GTAAGAACAA ACTTAAAATC CATGTTCGAT GATTTATGGA ATAAGTACAC TTCGGATATT 
GCAGCAAACA GAAATATGCC GCCCGAAAAA ATTAGGGCTT TCGCCGAAAA CAATAATGCT 
CTTATAAAAA AATATGAAGG AAACGGAGCG AAGGCCGCTT TAGAAGAAGG CTTTGTTACC 
GATATTGCTT CAGTCGATGA GTTTGCTGCA AACATAGGCT TTGCCGATAG TAAAACATTT 
TCGGTAACCG TAAACACAAT AGGCTATGAT TCATATAATG CAAACTTTGC AGAAATGCCC 
TCTCAAAATT CTATAGGCGT TATTCATATA AACGGAGCTA TCTCTTCTAC CGGTACAGGG 
CGTATAGATG ACTCTGCCGT AAGTTACAAG ATTGTAGATC TTTTTGATAT TGCTCAAGGA 
GATCCGACTG TAAAAGCTAT CGTTGTAAGA GTAAATTCAG GCGGAGGAGA GGTCTTTGCT 
TCGGAAGAAA TAAGACGCGC TATAGACAGA GCTAAAGCAT CAGGTTTACC TGTTGTAGTT 
TCCATGGGGT CCGTTGCCGC CTCGGGAGCT TATTGGATTT CTTCTTCTGC AGATTATATT 
TTTGCAAGCC CCTACACAAT TACCGGCTCA ATCGGTGTAT TGGCTACAGC TCCATCTTTT 
AAAGAAGCCG TTAAAAAATA TCTGGGTATA ACAAGCGATT TGGTTTATTC GGGACAAAAG 
CCTTCATATT CCGTTTTAGA AGAACCTTCT CCTGAAGAAA AAGAGGTAAG GCAGATGGAA 
GTTATGCACA TATATAAGAC CTTTATCGAA ACCGTAGCAA GGGGAAGAAA TCTTCCTGAA 
AAAACCGTTG AAGAATTAGC CGGCGGCCGT GTCTATTCAG GTGAACAGGC CTTAAATTTA 
AAATTGGTTG ATGCTTTAGG CTCTTTGGAC GAGGCGGTAA AATATGCTGC AGAGCTTGCA 
AACATAAGCG GACAATATTC CGTAAAAGAA ATAAAAAAGC CCCTACCTTT TACGGAAGCC 
TTGATAAAAA GTATTTTAGA AGATCTTGAT GCTTCGACAC TTTCGCAGAT GAACTTTGCA 
GACATCAAGG CTTTCACTGA CTTTTTAAAT TTAAAATCAA AAAAAGGCAT CTATGTTTAC 
AGCCCCGAAT ACCTTATTTG GGAAAACTAA 

 

Protein sequence

MQENQEQKKR PGCFMAFFRG INILRLIIIN IIFFFFFFSF LGVMGSIPSN TKTVERVPSE 
AVLMINPSGV LTEKESDIFS AGIPAIGKKS AVLVSDLVKA IKNAAFDRRI TSLYLDFSEL 
GGLSSGHLSE LGDALKVFKN SGKKIYAYAV GYSIPSYFLA SYADRIGIDP LGEVSFAGFA 
SRPVFFKGLE EKFGIKWNVI QAGTYKGMAE TYSRDNLSQN VRTNLKSMFD DLWNKYTSDI 
AANRNMPPEK IRAFAENNNA LIKKYEGNGA KAALEEGFVT DIASVDEFAA NIGFADSKTF 
SVTVNTIGYD SYNANFAEMP SQNSIGVIHI NGAISSTGTG RIDDSAVSYK IVDLFDIAQG 
DPTVKAIVVR VNSGGGEVFA SEEIRRAIDR AKASGLPVVV SMGSVAASGA YWISSSADYI 
FASPYTITGS IGVLATAPSF KEAVKKYLGI TSDLVYSGQK PSYSVLEEPS PEEKEVRQME 
VMHIYKTFIE TVARGRNLPE KTVEELAGGR VYSGEQALNL KLVDALGSLD EAVKYAAELA 
NISGQYSVKE IKKPLPFTEA LIKSILEDLD ASTLSQMNFA DIKAFTDFLN LKSKKGIYVY 
SPEYLIWEN