| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0171 |
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| Symbol | |
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| ID | 2739523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 200105 |
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| End bp | 203197 |
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| Gene Length | 3093 bp |
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| Protein Length | 1030 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637159040 |
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| Product | nuclease SbcCD, C subunit, putative |
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| Protein accession | NP_970787 |
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| Protein GI | 42525689 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC
[TIGR03185] DNA sulfur modification protein DndD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGCCTG AAATTTTAAA ACTAACCAAT ATAGGCCCCT TTCGAGGAAC CCACACAATA
GATTTTAGCC TCATGGATTC TATTTTTTTG GTATGCGGAA AAACCGGTGC CGGAAAAACA
ACCATCTTCG ATGCAATCTC TTATGCCTTT TATTCAAAGC CTTTGGGGAG CCGCTCCCAA
ATTACCCGCA GCCTCAGAAG TCAGTTTGCC CCCGAAGAGG AAACGGCCGA GGTTGAGCTT
GTATTTACTA TGGGACCTGC CAAATACAGG ATTTTTAGAA GGCTCCCTTT TTTACGCCCG
GGAAAGAAAA ACGAAACGCC TGAAGAATCG GCCCTAGCTC AATGGGACGG CAAAACTTGG
AAAGATTTAA GCTCTACAAA TAAAAGGGAC ACGGATAAAA AAATATTGAA CATAATAAAC
CTAAACGAAA AAGAATTTGC CCGCATTGTC CTCCTCCCCC AAGGCGAATT CGCCGCTTTT
TTACGCGAAA ACTCAAGCCA AAAAAAAGAA ACCCTTGAAG AGCTTTTTCC GATTTCCCGC
TACACCAAAA TAATGGAAAA TCTAAAGGAA AGAGAAAAAG CGGAGTCCTA TAAGATAAAA
AACACGCAAG ATGCCCTTGA AGCCCTCGGA AAAGAATTCG ATGCCGATTC CTATCCTTCA
AAAAAAGAAG GCTTTGAAAA AGAGATAGAA CTTATCAAAA AAAATTATAA CAAAATATCA
AAAAAAATAG AGGAAAAAAT CTCCGAAAAA GAACAGGCAA AGGTTCTCAA AGAAAAAAAA
GAAGAACTTG TAACAATAAA AACAAGGCTC GAAAATCTTA ATGCCCATAA AGAAGAAATA
GGCCTGATGG AAGAAGCAGT CGAAAAAGCC CGCAGAGCCG CCTCTCTTGC AGCGCTTGCC
GATTCCGTAA GCAAACTGAA AAACAACATA GCCGAATATA AAACCGACAT CGAAAAAAAG
ATAAAAGACC TAAATGCCGT AACCCAAGTT TTGGATTCTC TTAAAGCACA AGAAAAAGAA
ATCGAAGCCG AAAAAGAAAA CAATACGGCC CTAAAGCAAA GCCTCGACCG CCTCAAAAGG
GCTGCCGAGG TATACAAAGA AATAGAAGAA CGCTCTTATG AGAAAAAAGG TCTTTCTTTA
CAAAAAAAAG AAAATACCGA AAAACTTGCT CAAACCGAAA AAAACATTCA GGAACTAAAA
GACAAAGTTT CGGAATACCT TGAAATAATC AGCGAGCTCG ATAACAGAAA GGAAATGGCT
GAAACCTCAA CCCAAAAACT TTCTTACCTA AAAAGACTTT TTGATATTGC GGTAAAAAAA
GAAAAAGCCT CAAAGCTCTA CACAACCCAT AAGGCGGCCG CCGAAAAAAA CTACAACGAT
TTACAGTTAA TTTTAAAGGA CATCGAAATA GAAAAAGAGC TTTTTGAAAA ACTTAAAAAA
GAAAAAAAAG ATTTGGAAAT AAACGCAGAA GCCTCAGCCC TTGCCGTTCA CTTAAAAGAC
GGAGAGCCAT GTCCTGTCTG CGGCTCAATC CATCATCCTT CCCCTGCCGT CGAAAATACG
GAAAGTATTT TTTCTCTGGA CGAAAAAATA CAAAAATGTG AACGCAGCAT CGAAAAGTTT
AATCTCGATA AAGACTCTCT AAGCAACAGC CTCACAGCCC GCAATAAAGA TGCGGACTGG
CATAAGGAGC AGCTGGCAGA GCTTGACCGC TCTTTTTTCA ATCTGAATGA AGAATTTAAA
AACACTTCCT TTATTTTTGA AGAGATGCCC TCGGAAAAAA CAATAGAAGA CCTTCTTCCG
CAAGCCGGAA AGGAAGCCGA AAAAGACTCT CTTCTTTTTA AAGAAGCCCA AACCGCAAAT
ACTGCAAAAA TAAATTTGGA GCAAAAACTT TCTTCTATTC AAACCCAAAA AGAAGCTCTA
ACAGATGCTC TTACAAATAT CAAGATAAAA GAAAGCGAGT TAAACACAAT CCTCCATGAA
AAGAAAAAGC AATATGATGA TGCCTTTAAA TCTATCCCCT CCGATATCCA AAAAGAAAAT
ATAGATGACA CTATCGAGGG CTGTAATGAA ATGATTTTTG CCTCCGACCG TAAAATAAGC
GGTTATGAGG AAAAGCTCAA AGAAAACAAT GACCGTCATA CAAGCATAAA GGCGGGGCTT
ATTCAAAGAC AGGAACAGTT GGCCAAGTGG GAAAAATCTT TATTGGAAGA AGAAGAAAAT
TTAAAAGATT CTTTTGAGCG TAAAGGCTTT TCCTCCTTAA AAGAGCTTTT AGATTCTATT
TTGCCCGAAG AAAAAATCTC CGATTTTGAA GAAACCATAA CAAAATTTAA AGAAGAAAAG
ATTACCTTGG AACATTCCGC CGCCGGCCTC AAAAAAGATA TTGAAGGCAA AACTTTTATT
CAGCCCGAAA AGATTGAAGA CGAAATTATA ATCTTGCAAA AAAATCTTGA TGAAGAACAA
GACCGCCTTG CAGAAATAAA AAGCTCCCTC GACAAGCTCA AAGACCTTTT TGAAAGACGA
CAGAGCCTTT TAAAGGAATT AAAACAAAGA GCAGAAGAAG CTCAACTTAT AACCGAGCTT
TCTTTAAGTT TAAACGGCAG CAATAAATAC AAACTGAAAT TCAATATTTG GATGCTCTCG
GCCTTTTTGC GCGAAATAAT CGTCTATGCC AACACCCGTC TTGAACGCAT GAGCGGAGGC
CGCTATGTCT TAAAGTTGAG CAAGGAGCTT TCGGGCAACA ATCTTTCCGG ATTGGACATG
GAAATTTATG ATGCCTATAC GGGCGGCATC CGTCCTACAG CCAGTCTTTC GGGAGGAGAA
ACCTTTATGG TTTCCATAAG CTTAGCCCTC GGCCTTGCCG ACTCCATTCA AACAAGAAGC
GGAGGCATAA GGCTTGATTC AATGTTTATA GATGAGGGCT TCGGCAGCCT CGATGAAGCA
AGCCTTGAAA ACGCCATAAG CATTCTCGAT GAGGTAAGGG GTAACCGCAT GGTCGGGATA
ATTTCCCATG TCAGCGAGCT AAAAACCCGC ATCCCCCAAA AAATCGAAAT AGAAAAGAAC
TCCAATGGTT CTACAATAAA AATAAGAGGT TAA
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| Protein sequence | MKPEILKLTN IGPFRGTHTI DFSLMDSIFL VCGKTGAGKT TIFDAISYAF YSKPLGSRSQ
ITRSLRSQFA PEEETAEVEL VFTMGPAKYR IFRRLPFLRP GKKNETPEES ALAQWDGKTW
KDLSSTNKRD TDKKILNIIN LNEKEFARIV LLPQGEFAAF LRENSSQKKE TLEELFPISR
YTKIMENLKE REKAESYKIK NTQDALEALG KEFDADSYPS KKEGFEKEIE LIKKNYNKIS
KKIEEKISEK EQAKVLKEKK EELVTIKTRL ENLNAHKEEI GLMEEAVEKA RRAASLAALA
DSVSKLKNNI AEYKTDIEKK IKDLNAVTQV LDSLKAQEKE IEAEKENNTA LKQSLDRLKR
AAEVYKEIEE RSYEKKGLSL QKKENTEKLA QTEKNIQELK DKVSEYLEII SELDNRKEMA
ETSTQKLSYL KRLFDIAVKK EKASKLYTTH KAAAEKNYND LQLILKDIEI EKELFEKLKK
EKKDLEINAE ASALAVHLKD GEPCPVCGSI HHPSPAVENT ESIFSLDEKI QKCERSIEKF
NLDKDSLSNS LTARNKDADW HKEQLAELDR SFFNLNEEFK NTSFIFEEMP SEKTIEDLLP
QAGKEAEKDS LLFKEAQTAN TAKINLEQKL SSIQTQKEAL TDALTNIKIK ESELNTILHE
KKKQYDDAFK SIPSDIQKEN IDDTIEGCNE MIFASDRKIS GYEEKLKENN DRHTSIKAGL
IQRQEQLAKW EKSLLEEEEN LKDSFERKGF SSLKELLDSI LPEEKISDFE ETITKFKEEK
ITLEHSAAGL KKDIEGKTFI QPEKIEDEII ILQKNLDEEQ DRLAEIKSSL DKLKDLFERR
QSLLKELKQR AEEAQLITEL SLSLNGSNKY KLKFNIWMLS AFLREIIVYA NTRLERMSGG
RYVLKLSKEL SGNNLSGLDM EIYDAYTGGI RPTASLSGGE TFMVSISLAL GLADSIQTRS
GGIRLDSMFI DEGFGSLDEA SLENAISILD EVRGNRMVGI ISHVSELKTR IPQKIEIEKN
SNGSTIKIRG
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