| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0111 |
|---|
| Symbol | |
|---|
| ID | 2741726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 131755 |
|---|
| End bp | 132174 |
|---|
| Gene Length | 420 bp |
|---|
| Protein Length | 139 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637158981 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_970728 |
|---|
| Protein GI | 42525630 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1664] Integral membrane protein CcmA involved in cell shape determination |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATT TTATTGACGA TATTTCCATA AACACAATCA TAGGCCCGGG AACCTTTGTA
AACGGAAGCT TAAGCGTACC CGGATTTTTA CGTGTAGACG GAGATATAAA CGGAGACATA
AAAACCCCCG GAAGAGTTAT AATTGCAGAG AATGCAAGAG TCCGAGGAAA CGTACATGCC
AAGTCGATAA CCATAGGCGG AATGGTTCAA GGCGATGTTA TAGCTCCGGA AAGTGTGATC
GTCCTGTCAA CAGGCCTTAT TTTAGGCTCG GTTTTGACAA AAAAAATACG TTTAGATGAT
GATGTATTTT TACACGGCTA CTGCTTTGCC ATAGATAATC AGGCCGAATT TGAAAAGGCG
GAAAAAGAAT ACAAAAACAG ACAGGGCCTT GCGGCTTCTG CTCTTGTACA TTCCAGGTGA
|
|---|
| Protein sequence | MADFIDDISI NTIIGPGTFV NGSLSVPGFL RVDGDINGDI KTPGRVIIAE NARVRGNVHA
KSITIGGMVQ GDVIAPESVI VLSTGLILGS VLTKKIRLDD DVFLHGYCFA IDNQAEFEKA
EKEYKNRQGL AASALVHSR
|
|---|
| |