Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE0090 |
Symbol | |
ID | 2741705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | - |
Start bp | 108634 |
End bp | 109296 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 637158960 |
Product | hypothetical protein |
Protein accession | NP_970707 |
Protein GI | 42525609 |
COG category | [K] Transcription |
COG ID | [COG5662] Predicted transmembrane transcriptional regulator (anti-sigma factor) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTACAT GCCCTGATAA AGATTTATAT TCGGCCTATG TTGATGGAGA ATTACAGTCC CCATGGAAAG AAAAAATTGA AGTTCACTTG GTTTCTTGTG AAAAATGCAG GAGTGTGGTT GACTCATATA GAAAAATCAG TTTAAAACTA TCTGAAAATT CTTTTCCTGA GCCTGACCTT GACGGTTCTT TCCTTAAACT CTATGCCAAA AGGCAGGATT GCCTAAAAAA AATGGAATTC AACAAGAGCA AACCTACAAG CTGGTTCTAT AAATCGAATA AAATTCCTAT CCCGGCCTTA GCGGCGGCTG CTCTGTTTCT TTTTGTGTTG ACACCTATTA TTGTTTTGAG TACACAAGAA AGTTTAGAAC CATCCGGAGC TGTTGCAGCT ACCGAATTTA AAGCTATTGA TTCTATAATT AACGGTTTAA AACCCGTAAA TAAATTCAAG TTAAATGTTT CAAATGTTTT GGGCGTAAAT GAAGATGTAT CGGTTTTTGA AGGCAAAAAG AAGGAAATAA ATTTAAGCCA ATATGTAAAT TTATACTTGC CTCCCTCAAA TAACGCAGAA TTTGATATAT TAAAGCAAGA AATAAAGCCT CAAGTTTTAT TTCTTAACAC TCAAAATGCA ATAACCCGAA CTTCTGTAAA CAATGGGCAA TAG
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Protein sequence | MSTCPDKDLY SAYVDGELQS PWKEKIEVHL VSCEKCRSVV DSYRKISLKL SENSFPEPDL DGSFLKLYAK RQDCLKKMEF NKSKPTSWFY KSNKIPIPAL AAAALFLFVL TPIIVLSTQE SLEPSGAVAA TEFKAIDSII NGLKPVNKFK LNVSNVLGVN EDVSVFEGKK KEINLSQYVN LYLPPSNNAE FDILKQEIKP QVLFLNTQNA ITRTSVNNGQ
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