| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0085 |
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| Symbol | |
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| ID | 2741700 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 97686 |
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| End bp | 101105 |
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| Gene Length | 3420 bp |
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| Protein Length | 1139 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 637158955 |
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| Product | ATP-dependent DNA helicase UvrD |
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| Protein accession | NP_970702 |
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| Protein GI | 42525604 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGATT ATATAAAAAA TATAATGGAT AGTTTAAATG AAAATCAAAA AAATGCAGTA
AGCGTTGAAA AAAATTCCGT AATTGCTGCG GGAGCCGGTT CCGGAAAAAC GAAAGTGTTG
GCTGCGCGCT ATGTTTATTT TGTTGTTGAA AAGGGTGTCA GCGTAGAAAA AATAATAGCT
CTAACCTTTA CCGAAAAAGC CGCAGCCGAG ATGCACAAAA GAATTTATAA CGAGTTAAAA
AAAATAGATC ATCCTAACGC AAAAAATGCT ATCGAAAAAT TTCATCTTGC AAAAATTTCG
ACGATAGATT CTTTTTGCAA TCGAATAGCA AGGGATGCAT GTAGAAACTT AGGTATTTCT
CCCGATTTTA ACATTGATAA TACCGAATCG GAAAAGTTGG CTTACCGCAT AGGCTTGGAT
TTCTTTTTGA AAATGCGCTC GGATAAAACG ATGCAGTTTT TTTTAGGTGA TAACGGCATA
GATGATTTTG TGTCGGGCCT TTTTGTAAAA TTATTAAGTA ATTATGTTTT GATTTCAAGA
CCAATTGATT TTAAAAAAAG TTTGGAAGAT CAAATAAAAT ATCATGATGA CGAAGAAAGA
AAAACTCTAG CGGAATGTTT TGATGTTTTT GAATTTATAA AAGAAAACGA TCCTTCTAAA
AATTTTACGG AAGAAGCTAT TAGCGAGTTT TCTACCCTTC CTCATTTTCC AGAATCGATA
AAAGATGAAG CCTTTATTAA GCTGCTTCCT ATTGTAGATA AAATTTCTAA AACAGCAAAA
GGTAGAGGAA ATGATGCCGT AAAAGAAATA AAAGAAAAAT TAAAAATCAT ATATGAAAAA
CTTATATGTA TTTATAATTT TGACTACTCA CGAGATTTCT TAGCTTCTTT TTTTGATATG
CTTAATGAGC TTCAAAAAGA ATATATATAT GAAAAAAAAC AAAGAGGTCT TTTAACTTTT
TCGGATGTGT CACAGCTTGC TGTGGATGTT TTGATAAATG ACATAGATTT ACGAAACTTT
TATAAAAAGA ATGCAGACAT TATTATGATA GATGAGTTTC AAGATAACAA TAGTCTGCAA
AGAGATTTGC TTTTTTTAAT TGCCGAAAAA TTTGAACGCT CCGAAAAATT CGTGCCCGGT
CCTCACGAAC TTTGTCCCAA TAAACTTTTT TTTGTCGGAG ATGAAAAGCA GTCGATTTAT
GCTTTTAGAG GAGCTGATGT TTCCGTATTC CGAAAACTTG CTGACGATAT TTCGGATAAA
GAAAGACTTG CCGCTACAAG GCTTTTGATA AATTACCGCA CGGAGCCTAC TCTTATAAAT
TTATTTAATA CAATATTCTC CAAAGTTTTT TATTCCGAGG TAAATAAGCC CTTGGAAAAA
AACGGATTTG TTCCCGCCTA TGAAGCGGAA TATGTGCCGA CTGAAACGAG AGCTCCTGTA
AAAGGGATTG AGCCTAAAAT TGAAATAATG TTTTTTGATA AAAAAAGATT TAATGCTTTG
GAAGATTCAA GCCGGTTTCT TAGTCCTGTA GAAGCTGAAG CTTTTTATCT TGCAAAAAGA
ATTTTAGAAT TGCGTAATCA AGGTTTTAAA ATTAGGGACG GTAAATCTGC AAGAGCTTGT
TCATGGAGCG ACTTTGCCGT CTTGCTCAGA GCTTCAACAA AGCAAAGTAC ATACGAAAGA
GTTTTCCGCA ATTTTGGTAT TCCTTATAGG AGTGTACAGC AAAGAGGTTT GTTTAATGAT
GCGCCTATAA ATGATATTTA TGCTATGCTT AAAATTATAG CCTATCCTTC CGATAAAAAA
ACTTATGCTC AAGTTTTACA TTCGCCTTTT GTAAATATAG ATGATGATGC CTTTGCAGTT
TTACTTTTAA ATTTTACAAA AGCTTTCGAT ATTTCTTTAG CGGAAAAATT AAATGAAAAA
AATAAAGATG CCTATTTGCG GGCTTGCGAT TTATTTGCTC GCTTAAATAA AAATATTTTA
ACTATGAGCT GTGCCGAGTC GGTTACATAT CTTTGGTATG AAGAAGCTTA TAGATATTTT
TTATTGAGCA ATGAAGAAAA TCATCACTAT ATGGATTTAT ATGATTATCT TTTTGAGCTT
GCATGTCAGG CTGATATCAA CGGATTAACT TTTTCTCAAT TTGTGGATTT GCTTTCATCT
CATATTGAAG ATAATGAAAG ACTTGATGAT ATGGAGCTTC CCTTAGATGA TCAAAAAGAC
TCCGTTCAAT TTTTAACTGT GCATAAGAGC AAGGGTTTGG AATTCCCTAT TGTTATAGTT
CCCGACTGCG GAAATAGGGG TATCCCTGAA AAAAAAGAGG GGCTCGTTTT TTATAATGAA
GATATGGGAC CTGTTTTGTA TTCTCCTAAG GCTCCGGGCT TGCCTGCGAA AGCTGGCAAT
CTGATTTTTG AATCATTACG TGATGAGGCT AATGCAAAGC TTGTTGCAGA AACAAAACGG
CTTCTTTATG TTGCAGCTAC AAGAGCTGAA TCCTATTTAA TTATAAGCGG CGTATATAAT
CATTTACAAA ATGAAGACTC TAAAGATTCT AAAAAAGATG TGACCAAAGA TAATGATTGT
TCATCTTCAG ATTCAAGAAG TCTTGAAGAA ATAAAAAGCA TGCTTAAACT TTCGGACAAG
ACTATAAGCT TTTTTGAATT GCTTTTGCCT GCTCTTCCCG ATAAACATGA AGATATTATT
TTTACTGAGA TTTTACCTAC CGAAAGAAAG AAGCTGTTTA ATAATTTAAA AACACAAAAG
CATGAAAAAG TCAATTTTGA AAAACTTTTT GCTTCTTCTA AAGTAAAAGA ATTTAATCTT
GCAGAAAAAA GAATAACTAC CGCTACAAGT CTTGCTCATG AGGTAAATAA AAAATCAAGA
GAAGGTTATT TGTATTCTTT AACTTCTGAA AAAGATAAGC TGCCTGATTC TTTTGAAGAT
AAAGATGGAC AAAAAGAATT TACAGCGGCC GAGTTGGGAA CTCTTACCCA CTCCTTAATA
GAAGCTCGTC TTTTAAATAA AGAATTTATT TATCCAAAAG GTCATTCCGA AGTTGAAAGA
AAAAAGATTT ATGCTTGGGC CGATAATTTC TTTAATTCGG ATATGTATGT TCTTGCAAAA
GAAGCCGAAC AATTAAAAAG CGAATACGGT TTTTTAACGG ATTATGAAGG GCAAATTGTA
AGCGGGCAGA TAGACTTACT TTTTAAAAAA AGCGGAATAG TCTATGTTGT CGACTATAAA
ACCGATGAGA TAGAAAATCC GGATTCACAC TTAACCCAGC TGAAGATTTA TAAAAAAGCC
GCCTCTGATC TTGCAAAAAC CGAATCGGAA AATCTTAAAG AAAATACTGA TAAGCCAATC
GAGGTTAAGA CCTTTATCTT CTATCTAAAA ACGGGACATT GTGTTGAGCT TAAAACATAG
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| Protein sequence | MNDYIKNIMD SLNENQKNAV SVEKNSVIAA GAGSGKTKVL AARYVYFVVE KGVSVEKIIA
LTFTEKAAAE MHKRIYNELK KIDHPNAKNA IEKFHLAKIS TIDSFCNRIA RDACRNLGIS
PDFNIDNTES EKLAYRIGLD FFLKMRSDKT MQFFLGDNGI DDFVSGLFVK LLSNYVLISR
PIDFKKSLED QIKYHDDEER KTLAECFDVF EFIKENDPSK NFTEEAISEF STLPHFPESI
KDEAFIKLLP IVDKISKTAK GRGNDAVKEI KEKLKIIYEK LICIYNFDYS RDFLASFFDM
LNELQKEYIY EKKQRGLLTF SDVSQLAVDV LINDIDLRNF YKKNADIIMI DEFQDNNSLQ
RDLLFLIAEK FERSEKFVPG PHELCPNKLF FVGDEKQSIY AFRGADVSVF RKLADDISDK
ERLAATRLLI NYRTEPTLIN LFNTIFSKVF YSEVNKPLEK NGFVPAYEAE YVPTETRAPV
KGIEPKIEIM FFDKKRFNAL EDSSRFLSPV EAEAFYLAKR ILELRNQGFK IRDGKSARAC
SWSDFAVLLR ASTKQSTYER VFRNFGIPYR SVQQRGLFND APINDIYAML KIIAYPSDKK
TYAQVLHSPF VNIDDDAFAV LLLNFTKAFD ISLAEKLNEK NKDAYLRACD LFARLNKNIL
TMSCAESVTY LWYEEAYRYF LLSNEENHHY MDLYDYLFEL ACQADINGLT FSQFVDLLSS
HIEDNERLDD MELPLDDQKD SVQFLTVHKS KGLEFPIVIV PDCGNRGIPE KKEGLVFYNE
DMGPVLYSPK APGLPAKAGN LIFESLRDEA NAKLVAETKR LLYVAATRAE SYLIISGVYN
HLQNEDSKDS KKDVTKDNDC SSSDSRSLEE IKSMLKLSDK TISFFELLLP ALPDKHEDII
FTEILPTERK KLFNNLKTQK HEKVNFEKLF ASSKVKEFNL AEKRITTATS LAHEVNKKSR
EGYLYSLTSE KDKLPDSFED KDGQKEFTAA ELGTLTHSLI EARLLNKEFI YPKGHSEVER
KKIYAWADNF FNSDMYVLAK EAEQLKSEYG FLTDYEGQIV SGQIDLLFKK SGIVYVVDYK
TDEIENPDSH LTQLKIYKKA ASDLAKTESE NLKENTDKPI EVKTFIFYLK TGHCVELKT
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