Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE0070 |
Symbol | |
ID | 2741685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | + |
Start bp | 77853 |
End bp | 78680 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 637158940 |
Product | sigma-70 family RNA polymerase sigma factor |
Protein accession | NP_970687 |
Protein GI | 42525589 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGGAGA ATCTGCTTTT ACAATACATT AAGGATAGCA AAAAATATCC TCTTTTATCA GCCGAGCAAG AAGCAGAATT AGCCGATGAG GTAAAAAAAG GCAATACAGA GGCTATAGAG GTTCTTGTTA CATCAAACTT GCGGCTTGTA ATAAAAATGG CTAAAAAGTT CAGCTCAAAT GAAAACCAAA TTTTGGAACT CATTCAAGAA GGTAATATGG GTCTCATGAA GGCTGCTTCT AAATTTTCAA AATCGTTTAA AGTCCGTTTT TCAAGCTATG CAGCTTGGTG GATAAAACAA TCTTTTATAA GATACTTGAA TTCTGCCGAC AAAGTTATAA AACTTCCCGT AAGAAAAGAA GCCTTAATCC GCCAAGTACA CAAAGAAGAA GAAAACTATA AAATAAAATA CGGAATTTTA CCTTCTTATA GCCAGCTTGC AGAAATAATG AAAGAAAAAG TAGATATTAT CGCTCAGATA AAATCGTTTA ATTATACAGA TATATGCAGT TTAGACGATC CTGTTGATAA CGAAAGATCG GCAAACCTGT ATGATTTTAT TCCGTGTAAT ACCTATAACC CCGAAGAAGA GTTTATAGAT AACGAATTCA AAGAAAAATT AAATAAGTGT TTGGAAATAC TTAATGACCG CGAAAAAGAT GTTTTAAGAA ACCGATACGG TCTTGACGGT ACTATGACCT CGACCACCTT TGCCGTCTTA GGAAAAAAAT ATTCAATCTC GGCTGAATCC ATCCGTCAAA CCCAGCTGAG AGCCCTAAAA AAATTAAGAG CCGATACAAA TAAGATTAAA GCAATGGTCT CGGTATAG
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Protein sequence | MTENLLLQYI KDSKKYPLLS AEQEAELADE VKKGNTEAIE VLVTSNLRLV IKMAKKFSSN ENQILELIQE GNMGLMKAAS KFSKSFKVRF SSYAAWWIKQ SFIRYLNSAD KVIKLPVRKE ALIRQVHKEE ENYKIKYGIL PSYSQLAEIM KEKVDIIAQI KSFNYTDICS LDDPVDNERS ANLYDFIPCN TYNPEEEFID NEFKEKLNKC LEILNDREKD VLRNRYGLDG TMTSTTFAVL GKKYSISAES IRQTQLRALK KLRADTNKIK AMVSV
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