Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE0033 |
Symbol | |
ID | 2741648 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | - |
Start bp | 40067 |
End bp | 40786 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 637158903 |
Product | DNA-binding response regulator |
Protein accession | NP_970650 |
Protein GI | 42525552 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3279] Response regulator of the LytR/AlgR family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00150761 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTAAAA TAGCCGTCAT CGAAGATAAT GAAGTTCAAT CCAGACTCCT AAAGGACTAT GCAAACGAAT GGGCAAATAA AAATAATCTT TTGCCGGAAA TTAAACTTTT TTCTTCAGGC GAACAGTTTT GGTTTGAATT TGAAGAGCTT TCCGATATAG ATATAATCTT ATTGGATATA CAGATGTCTA GGATAAGCGG TATCGAACTT GCCAAAAAAA TAAGAAAAAC AAAAAGCGAT GCCGTTATCA TCTTTATAAC AGGTATACCC GACTATATGC AGGAAGGCTA CGATGTCGAA GCCTTGCACT ATCTTTTAAA GCCTGTAAAA AAAGAAAAAC TTTTTGATTG CTTGGATCGA GCCTTAAAAA AGCAGGATAA AGTTAAAGAA GAAAATTTTG TCTTTTCATG CGAAGGCCGC CTTACAACAT TAAAGCAATC TGAAATTGTT TTTATAGAAT CTATTTCGCA TAATCTAAAA ATAAAAACTT TAAAAAGCGA GTACATAACA AGGATGAATT TATCGGAGGC GGAAGAAAAG CTAAATTCCA AACTATTTGT AAAAACTCAC AGAGCCTTTA TCGCAAACCT GATGCACATA AGGCAGCTTC AAAAAGACAA GGCCGTCCTT GCAGATAATA CTTTAATTCC GATAAGCCGC AGGGAATATA AAAATGTCAA CACTCTTTTT ATCGGCTTTT TTACCCAAGG AGAAACCTGA
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Protein sequence | MLKIAVIEDN EVQSRLLKDY ANEWANKNNL LPEIKLFSSG EQFWFEFEEL SDIDIILLDI QMSRISGIEL AKKIRKTKSD AVIIFITGIP DYMQEGYDVE ALHYLLKPVK KEKLFDCLDR ALKKQDKVKE ENFVFSCEGR LTTLKQSEIV FIESISHNLK IKTLKSEYIT RMNLSEAEEK LNSKLFVKTH RAFIANLMHI RQLQKDKAVL ADNTLIPISR REYKNVNTLF IGFFTQGET
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