Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TBFG_13443 |
Symbol | |
ID | 5224132 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Mycobacterium tuberculosis F11 |
Kingdom | Bacteria |
Replicon accession | NC_009565 |
Strand | - |
Start bp | 3838283 |
End bp | 3840019 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640608212 |
Product | cholesterol oxidase precursor choD |
Protein accession | YP_001289370 |
Protein GI | 148824616 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 249 |
Plasmid unclonability p-value | 0.0394432 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 185 |
Fosmid unclonability p-value | 0.107199 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGCCGG ATTACGACGT CCTGATTATT GGATCGGGTT TCGGGGGCAG CGTCACCGCG CTGCGGCTGA CGGAAAAGGG CTACCGGGTC GGCGTGCTGG AGGCCGGCCG CCGGTTCTCC GACGAGGAGT TCGCCAAGAC GTCGTGGGAC CTGCGCAAGT TTCTCTGGGC GCCGAGGTTG GGCTGCTATG GCATTCAACG TATCCACCCG CTGCGCAACG TGATGATCCT GGCCGGCGCC GGGGTGGGCG GGGGCTCCCT CAACTACGCC AACACGTTGT ACGTGCCGCC GGAGCCGTTC TTCGCCGACC AGCAGTGGTC ACACATCACC GACTGGCGTG GCGAGCTGAT GCCGCACTAC CAGCAGGCGC AGCGGATGCT CGGGGTGGTG CAAAACCCGA CCTTCACCGA CGCCGACCGC ATCGTCAAGG AGGTCGCCGA CGAGATGGGG TTTGGCGACA CCTGGGTGCC GACCCCGGTT GGAGTGTTCT TCGGCCCCGA CGGCACCAAG ACGCCCGGCA AGACCGTGCC CGATCCCTAC TTCGGCGGTG CCGGGCCGGC GCGCACCGGC TGCCTGGAAT GCGGCTGCTG TATGACGGGC TGTCGCCACG GTGCCAAGAA CACCCTGGTG AAAAACTACC TTGGCCTCGC GGAATCAGCT GGCGCGCAAG TGATTCCGAT GACCACGGTG AAGGGGTTTG AGCGGCGGTC CGACGGGTTG TGGGAGGTCC GCACAGTGCG AACCGGCAGT TGGCTGCGCC GGGATCGGCG CACCTTCACC GCAACGCAGC TGGTGCTGGC CGCGGGCACC TGGGGGACCC AGCATCTGCT GTTCAAGATG CGGGATAGGG GTCGGCTCCC TGGTCTCTCG AAGCGATTGG GTGTCCTTAC CCGCACCAAC TCAGAATCGA TCGTCGGGGC CGCCACCTTG AAGGTCAATC CGGACCTGGA CCTGACCCAC GGCGTGGCGA TCACGTCGTC GATTCACCCG ACGGCCGACA CCCACATCGA ACCCGTGCGC TACGGCAAAG GCTCCAACGC GATGGGGCTG CTGCAGACCT TGATGACCGA CGGCTCCGGT CCGCAGGGCA CCGATGTGCC GCGCTGGAGG CAGTTGCTGC AGACCGCCAG TCAGGATCCG CGCGGCACCA TCCGGATGCT CAATCCCCGG CAATGGAGCG AGCGCACCGT GATCGCGCTG GTCATGCAGC ACCTGGACAA CTCGATCACC ACGTTCACCA AGCGCGGGAA GCTGGGTATC CGCTGGTACT CGAGCAAGCA GGGACACGGC GAGCCGAACC CTACATGGAT CCCGATCGGC AACCAGGTCA CCCGTCGCAT CGCCGCCAAA ATCGACGGCG TGGCCGGCGG CACCTGGGGT GAGCTGTTCA ACATCCCGCT CACCGCGCAC TTTCTCGGCG GCGCGGTGAT CGGCGACGAC CCCGAGCACG GCGTCATCGA CCCCTATCAC CGGGTCTATG GCTATCCGAC GCTGTACGTG GTTGACGGTG CGGCGATCTC GGCGAACCTG GGTGTCAACC CGTCGCTGTC CATCGCCGCT CAAGCCGAGC GGGCCGCCTC GCTGTGGCCG AACAAGGGCG AAACCGACCG GCGGCCACCG CAGGGTGAGC CCTATCGTCG GCTGGCGCCG ATCCAACCGG CGCACCCGGT GGTGCCTGCC GACGCCCCGG GCGCGCTGCG GTGGTTGCCG ATCGATCCGG TCAGCAACGC GGGCTGA
|
Protein sequence | MKPDYDVLII GSGFGGSVTA LRLTEKGYRV GVLEAGRRFS DEEFAKTSWD LRKFLWAPRL GCYGIQRIHP LRNVMILAGA GVGGGSLNYA NTLYVPPEPF FADQQWSHIT DWRGELMPHY QQAQRMLGVV QNPTFTDADR IVKEVADEMG FGDTWVPTPV GVFFGPDGTK TPGKTVPDPY FGGAGPARTG CLECGCCMTG CRHGAKNTLV KNYLGLAESA GAQVIPMTTV KGFERRSDGL WEVRTVRTGS WLRRDRRTFT ATQLVLAAGT WGTQHLLFKM RDRGRLPGLS KRLGVLTRTN SESIVGAATL KVNPDLDLTH GVAITSSIHP TADTHIEPVR YGKGSNAMGL LQTLMTDGSG PQGTDVPRWR QLLQTASQDP RGTIRMLNPR QWSERTVIAL VMQHLDNSIT TFTKRGKLGI RWYSSKQGHG EPNPTWIPIG NQVTRRIAAK IDGVAGGTWG ELFNIPLTAH FLGGAVIGDD PEHGVIDPYH RVYGYPTLYV VDGAAISANL GVNPSLSIAA QAERAASLWP NKGETDRRPP QGEPYRRLAP IQPAHPVVPA DAPGALRWLP IDPVSNAG
|
| |