Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TBFG_11038 |
Symbol | |
ID | 5221714 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Mycobacterium tuberculosis F11 |
Kingdom | Bacteria |
Replicon accession | NC_009565 |
Strand | + |
Start bp | 1142735 |
End bp | 1146439 |
Gene Length | 3705 bp |
Protein Length | 1234 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640605791 |
Product | transcription-repair coupling factor mfd |
Protein accession | YP_001286983 |
Protein GI | 148822229 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 109 |
Plasmid unclonability p-value | 0.970521 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 205 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCAC CGGGGCCTGC CTGCTCAGAT ACCCCGATCG CGGGGCTCGT CGAATTGGCG CTGAGCGCGC CGACATTCCA ACAGCTCATG CAGCGCGCCG GGGGTCGACC CGACGAATTG ACGCTCATCG CGCCGGCCAG CGCGCGGCTG TTGGTCGCCA GTGCGCTGGC TCGGCAGGGG CCATTGCTGG TGGTCACCGC CACCGGGCGG GAAGCCGACG ACCTGGCCGC CGAACTGCGT GGTGTGTTCG GGGATGCGGT GGCGTTGTTG CCGTCCTGGG AGACACTGCC GCACGAACGG CTCTCACCCG GTGTTGACAC CGTCGGCACT CGCCTGATGG CGCTGCGCCG GCTGGCCCAC CCCGACGATG CCCAGCTGGG CCCACCGCTG GGGGTAGTGG TGACCTCGGT GCGCTCGCTG CTGCAGCCCA TGACGCCGCA GCTGGGCATG ATGGAGCCCC TCACGCTGAC CGTTGGCGAC GAATCCCCCT TCGACGGCGT GGTGGCGCGG CTGGTCGAGC TGGCATATAC CCGGGTGGAT ATGGTCGGCC GGCGCGGCGA GTTCGCTGTG CGCGGCGGGA TTCTGGACAT CTTTGCCCCG ACGGCCGAAC ATCCGGTGCG GGTCGAGTTC TGGGGCGACG AGATCACCGA GATGCGGATG TTCTCGGTAG CCGACCAGCG CTCGATTCCG GAGATCGACA TTCACACACT GGTTGCCTTC GCCTGCCGTG AACTGCTGCT GAGCGAGGAC GTGCGGGCGC GGGCCGCCCA ACTGGCCGCA CGGCATCCCG CGGCCGAGAG CACCGTCACC GGCAGTGCTT CCGACATGCT GGCGAAGCTC GCCGAGGGCA TCGCGGTCGA CGGCATGGAG GCGGTGTTGC CGGTGCTCTG GTCCGACGGG CACGCGTTGC TGACCGATCA GCTGCCCGAC GGCACGCCGG TGTTGGTGTG CGACCCGGAA AAGGTGCGCA CCCGCGCCGC GGATCTGATC AGGACTGGCC GTGAATTCCT GGAAGCCTCG TGGTCGGTCG CGGCGCTGGG AACTGCAGAA AATCAAGCCC CCGTCGACGT CGAACAACTG GGTGGGTCGG GGTTCGTCGA ACTGGACCAG GTGCGGGCCG CGGCGGCCCG AACGGGTCAT CCGTGGTGGA CGTTGAGCCA ATTGTCCGAC GAGTCGGCGA TCGAGTTGGA CGTTCGGGCC GCGCCGTCGG CGCGCGGGCA CCAGCGTGAC ATCGACGAAA TCTTCGCGAT GCTACGTGCC CACATCGCGA CCGGCGGGTA CGCCGCGCTG GTCGCGCCGG GCACCGGAAC CGCACACCGC GTGGTGGAAC GGCTGTCCGA GTCCGACACC CCCGCGGGGA TGCTCGATCC CGGCCAGGCG CCCAAGCCGG GAGTCGTCGG GGTGCTCCAG GGCCCGCTGC GTGACGGCGT CATCATTCCC GGCGCCAACC TGGTCGTCAT CACCGAGACC GATTTGACCG GCAGCCGGGT CAGCGCCGCC GAGGGCAAGC GGCTGGCGGC CAAGCGGCGC AACATCGTCG ACCCGCTGGC GCTGACGGCC GGTGACCTGG TGGTGCACGA TCAGCACGGC ATCGGCCGGT TCGTGGAGAT GGTCGAGCGC ACGGTCGGGG GCGCCCGCCG GGAGTATCTG GTGCTGGAGT ATGCCTCGGC CAAGAGGGGT GGCGGGGCGA AAAATACTGA CAAGCTCTAT GTCCCGATGG ATTCGCTGGA CCAGCTGTCG CGGTATGTCG GCGGGCAGGC GCCGGCGCTG AGCCGGCTGG GCGGCAGCGA CTGGGCCAAC ACCAAGACCA AGGCGCGCCG CGCGGTGCGC GAGATCGCGG GCGAGCTGGT CTCGCTGTAC GCCAAACGGC AGGCCAGCCC CGGGCATGCG TTCTCGCCGG ACACGCCGTG GCAGGCCGAG CTGGAGGACG CGTTCGGCTT CACCGAGACC GTGGACCAGC TCACCGCCAT CGAAGAGGTC AAGGCGGACA TGGAAAAGCC GATCCCGATG GACCGGGTGA TCTGCGGCGA TGTCGGCTAC GGCAAGACCG AGATCGCGGT GCGGGCGGCG TTCAAGGCGG TCCAAGACGG TAAACAGGTC GCGGTGCTGG TGCCCACCAC GCTGCTGGCC GACCAGCATC TGCAGACGTT CGGCGAGCGA ATGTCCGGAT TCCCGGTGAC CATCAAGGGT CTGTCGCGGT TCACCGACGC CGCCGAGTCC CGCGCCGTGA TCGACGGCCT GGCCGACGGG TCGGTGGACA TCGTGATCGG CACCCATCGG CTGCTGCAGA CCGGGGTGCG CTGGAAGGAT CTGGGCCTGG TGGTGGTCGA CGAGGAGCAG CGGTTCGGCG TCGAGCACAA GGAGCACATC AAGTCACTGC GCACCCATGT CGACGTGCTG ACCATGAGCG CCACCCCGAT CCCGCGCACG TTGGAGATGA GCCTGGCCGG GATTCGCGAG ATGTCGACCA TCCTGACGCC GCCCGAGGAG CGCTACCCGG TGCTGACCTA CGTCGGACCG CACGACGACA AGCAGATCGC CGCGGCGCTG CGCCGGGAGC TGCTGCGCGA CGGGCAGGCG TTCTACGTGC ACAACCGGGT CAGCTCGATC GACGCGGCCG CCGCCCGGGT GCGTGAGCTG GTGCCCGAGG CGCGGGTGGT GGTCGCGCAC GGGCAGATGC CCGAGGACCT GTTGGAGACC ACCGTGCAAC GGTTCTGGAA CCGCGAGCAT GACATCCTGG TTTGCACCAC CATCGTGGAG ACCGGCCTGG ACATCTCCAA CGCCAACACT TTGATCGTCG AGCGCGCCGA TACCTTCGGG CTGTCCCAGC TGCACCAGCT GCGTGGCCGG GTGGGCCGCA GCCGGGAGCG CGGCTACGCC TATTTCCTCT ATCCACCGCA GGTGCCGCTG ACCGAGACCG CTTACGACCG GTTGGCGACG ATCGCGCAGA ACAATGAGCT GGGCGCGGGC ATGGCCGTGG CGTTGAAGGA CCTAGAGATC CGCGGTGCCG GCAACGTGCT CGGCATCGAG CAGTCCGGAC ACGTCGCCGG CGTCGGATTC GACCTGTACG TGCGGTTGGT CGGCGAGGCC CTGGAGACGT ACCGGGACGC GTACCGGGCG GCCGCCGACG GCCAAACCGT GAGGACCGCC GAAGAACCCA AGGATGTGCG AATCGACCTG CCCGTTGACG CGCACCTGCC ACCGGACTAC ATCGCCAGTG ATCGGCTGCG GCTGGAGGGC TACCGGCGGC TGGCGGCCGC CTCCTCTGAT CGCGAAGTGG CGGCCGTTGT GGACGAGCTC ACCGATCGGT ATGGGGCCCT GCCGGAGCCG GCCCGGCGGC TGGCGGCGGT GGCACGGCTG CGGCTGCTGT GCCGTGGCTC CGGCATCACC GACGTGACGG CGGCGTCGGC AGCGACCGTG CGGCTGTCCC CGTTGACGCT GCCGGACTCC GCCCAGGTGC GGCTGAAGCG AATGTATCCC GGAGCGCACT ACCGTGCCAC GACGGCCACC GTGCAGGTTC CCATTCCGCG AGCCGGTGGC CTCGGCGCGC CGCGAATCCG CGACGTCGAG CTGGTTCAGA TGGTGGCCGA TTTGATAACC GCGCTCGCTG GGAAACCGCG CCAGCATATT GGTATAACGA ACCCTAGCCC GCCAGGCGAA GACGGCCGTG GTCGCAACAC GACGATTAAG GAGCGACAAC CGTGA
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Protein sequence | MTAPGPACSD TPIAGLVELA LSAPTFQQLM QRAGGRPDEL TLIAPASARL LVASALARQG PLLVVTATGR EADDLAAELR GVFGDAVALL PSWETLPHER LSPGVDTVGT RLMALRRLAH PDDAQLGPPL GVVVTSVRSL LQPMTPQLGM MEPLTLTVGD ESPFDGVVAR LVELAYTRVD MVGRRGEFAV RGGILDIFAP TAEHPVRVEF WGDEITEMRM FSVADQRSIP EIDIHTLVAF ACRELLLSED VRARAAQLAA RHPAAESTVT GSASDMLAKL AEGIAVDGME AVLPVLWSDG HALLTDQLPD GTPVLVCDPE KVRTRAADLI RTGREFLEAS WSVAALGTAE NQAPVDVEQL GGSGFVELDQ VRAAAARTGH PWWTLSQLSD ESAIELDVRA APSARGHQRD IDEIFAMLRA HIATGGYAAL VAPGTGTAHR VVERLSESDT PAGMLDPGQA PKPGVVGVLQ GPLRDGVIIP GANLVVITET DLTGSRVSAA EGKRLAAKRR NIVDPLALTA GDLVVHDQHG IGRFVEMVER TVGGARREYL VLEYASAKRG GGAKNTDKLY VPMDSLDQLS RYVGGQAPAL SRLGGSDWAN TKTKARRAVR EIAGELVSLY AKRQASPGHA FSPDTPWQAE LEDAFGFTET VDQLTAIEEV KADMEKPIPM DRVICGDVGY GKTEIAVRAA FKAVQDGKQV AVLVPTTLLA DQHLQTFGER MSGFPVTIKG LSRFTDAAES RAVIDGLADG SVDIVIGTHR LLQTGVRWKD LGLVVVDEEQ RFGVEHKEHI KSLRTHVDVL TMSATPIPRT LEMSLAGIRE MSTILTPPEE RYPVLTYVGP HDDKQIAAAL RRELLRDGQA FYVHNRVSSI DAAAARVREL VPEARVVVAH GQMPEDLLET TVQRFWNREH DILVCTTIVE TGLDISNANT LIVERADTFG LSQLHQLRGR VGRSRERGYA YFLYPPQVPL TETAYDRLAT IAQNNELGAG MAVALKDLEI RGAGNVLGIE QSGHVAGVGF DLYVRLVGEA LETYRDAYRA AADGQTVRTA EEPKDVRIDL PVDAHLPPDY IASDRLRLEG YRRLAAASSD REVAAVVDEL TDRYGALPEP ARRLAAVARL RLLCRGSGIT DVTAASAATV RLSPLTLPDS AQVRLKRMYP GAHYRATTAT VQVPIPRAGG LGAPRIRDVE LVQMVADLIT ALAGKPRQHI GITNPSPPGE DGRGRNTTIK ERQP
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