Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_2368 |
Symbol | |
ID | 3774651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | + |
Start bp | 2433890 |
End bp | 2435020 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637800816 |
Product | secretion protein HlyD |
Protein accession | YP_401385 |
Protein GI | 81301177 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.108323 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTGTAC CCAGAACCCA TCGTCTCCAG CGTTTGACGG GCTGGGGGGT CGCCAGCGTC GTGCTGATGG GCGTTGCCAG CTGCCAAGGT CGGCAACCCG CAGCCTTTCA AGGGCCACCA GCGCTACCGG TCGACGTCAC CAAGGCCACC GTCGAGACAG TCAATGACCT GACCGAGTAC TTGGGGGCTC TAGAAGCGAC GGAGCAAACT ATCCTGCGTC CTCAAATTCA GGGCCGAATT GTCAGTGTGG CTGTGCAGCC TGGACAAATT GTGTCGGTCG GTCAGCCGAT GTTTGTGCTG GACTCGGAGC AAGTTGAAGC AGATGTGGCA GCTGCCAATG CAGAGGTCGC TCGTCAAGAA GCCCAACTTC GAGATGCCAA GATTACTTTT GAGCGGCAAA AGTTTCTGGC GGATCAAGGG GTCGTTCCCC TACAGAACCT AGATAACGCT CGACGAGAGC TCCAGACAGC TCAAGCGCAG CTTAAAGCAG CGCAACAGAA TGCAGTCGCC AAATCGGTTA ATGTCCAGTA CAAAACTGTG CGGGCCCCGA TCAATGGGTT GGTCGGCGAT ATCCGGCTCA AAATCGGTGA CTTTGTCGAC ACTGGGGCAG AGCTGACAAC GATCACCCGC AACAATCAGC TGTTCATTAA TATTCCAGTT CCAACGGTTC GCATTCCACA GCTTCGCAAG GGTCAACCAG TCAAGCTTTT AGACCCATTT TCCAAGAATA TTCTGGCAAC TGGAGCTGTC GACTTTGTCT CCCCGGTTGT GCAGCAAAAC TTACAAACGG TCTTAGTGAA AGTTGTTGTT CCCAATGCTG ATGGCTTAAT CCGTAACGGT CAAATCGTTC AATCCGAGAT TGTTTGGGAC CGCAAGGAGG CTGTTTTGGT GCCGACTCAA GCAGTCACTC CCTTAGCCGG TGCCAACTTT GTCTATGTTG TAGAGCCTAA GCCCAACAGC CCTGATCAAT TTCAGGTTCG ACAACAAAAG GTTGAGCTGG GTTCCATTTT CAATAATCGC TATCAAATTC GCTCAGGACT AAAGCCGGGC GAAACTGTCG CTACGACCAA CCTGCTCAGC CTGACAGATA AGGCAACTGT TAAACCTCAA ACGCCCAACG CTTCTCGCTA A
|
Protein sequence | MAVPRTHRLQ RLTGWGVASV VLMGVASCQG RQPAAFQGPP ALPVDVTKAT VETVNDLTEY LGALEATEQT ILRPQIQGRI VSVAVQPGQI VSVGQPMFVL DSEQVEADVA AANAEVARQE AQLRDAKITF ERQKFLADQG VVPLQNLDNA RRELQTAQAQ LKAAQQNAVA KSVNVQYKTV RAPINGLVGD IRLKIGDFVD TGAELTTITR NNQLFINIPV PTVRIPQLRK GQPVKLLDPF SKNILATGAV DFVSPVVQQN LQTVLVKVVV PNADGLIRNG QIVQSEIVWD RKEAVLVPTQ AVTPLAGANF VYVVEPKPNS PDQFQVRQQK VELGSIFNNR YQIRSGLKPG ETVATTNLLS LTDKATVKPQ TPNASR
|
| |