| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_2160 |
|---|
| Symbol | |
|---|
| ID | 3773717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 2242713 |
|---|
| End bp | 2243867 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637800605 |
|---|
| Product | alanine-glyoxylate aminotransferase |
|---|
| Protein accession | YP_401177 |
|---|
| Protein GI | 81300969 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0075] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0644335 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTCA CTCTTCCGAG CGTTAGCGAA AAACACCGTG TCCGTCTCCA GCCGCTGGAG
CTACCGGAGC GTCTGCTGCT CGGGCCCGGT CCGTCGAACG CCCATCCAGC TGTGCTGGAG
GCGATCAGTC GGCCACCCAT CGGTCACCTC GATCCTAAAT TTCTCGAGTT GATGACCGAA
GTACAGGGGT TGCTGCGCTA CATCTGGCAA ACCGATAACC GCCTGACCAT TCCCGTCAGC
GGCACGGGCA GTGCTGCCAT GGAAGCCACG ATCGCCAACA GCGTCGAGCC TGGGGATGTC
GTCCTGGTCG GCGTCATGGG CTACTTCGGC AACCGCCTTG TTGATATGGC GGGTCGCTAC
GGCGCTGATG TGCGCACCAT TCACAAGCCT TGGGGTGATG TCTTTAGCTT GGCTGAATTG
CGGCAAGCTT TGGAAGAACA CCGGCCACAA ATCCTTGCTC TCGTTCATGC CGAGACTTCG
ACGGGCGCTG AACAACCGCT AGCCGGCGTT GGCGATCTCT GTCGTGAGTT TGATTGCCTC
TTACTGATCG ACACCGTCAC CAGCTTGGGT GCGGTTCCAA CCCTGCTGGA TGAGTGGGGC
GTCGATTTGG CCTATAGCTG CAGCCAAAAA GGGCTGAGCT GCCCGCCGGG TGTGTCGCCG
TTCACGATGG GGCCCCGCGC TGAAGAGAAG CTGGCGCGCC GCAAGGGCAA AGTTGCCAAC
TGGTATCTGG ATATGTCGTT GCTCAACCAG TACTGGGGCA GCGATCGGGT TTACCACCAC
ACTGCGCCGG TGAACATGAA CTTCGGCATC CGTGAGGCGC TGCGCCTGAT TGCCGACGAA
GGTATCGAAA CAGTCTGGAA GCGCCACCGC GACAATGCCG AATATCTCTG GGCAGGCTTG
GAGGATTTGG GCCTGACCTG TCACGTCCCA GTCGAAAATC GCCTGCCGAC CCTGACGACT
GTGCGGATTC CTGAGGGCGT CGATGGCAAA GCCGTCAGCC GTCAACTGCT GGATGAACAC
GGCATCGAAA TGGGCGGTGG CTTGGGCGAA TTGGCAGGTA AAGTCTGGCG GATCGGCCTG
ATGGGCTACA ACAGCCGTCG CGAAAATGTC GATCGCTTGC TGAGCATTCT GGCAGACGTT
CTCCCCCGCT CTTAA
|
|---|
| Protein sequence | MTVTLPSVSE KHRVRLQPLE LPERLLLGPG PSNAHPAVLE AISRPPIGHL DPKFLELMTE
VQGLLRYIWQ TDNRLTIPVS GTGSAAMEAT IANSVEPGDV VLVGVMGYFG NRLVDMAGRY
GADVRTIHKP WGDVFSLAEL RQALEEHRPQ ILALVHAETS TGAEQPLAGV GDLCREFDCL
LLIDTVTSLG AVPTLLDEWG VDLAYSCSQK GLSCPPGVSP FTMGPRAEEK LARRKGKVAN
WYLDMSLLNQ YWGSDRVYHH TAPVNMNFGI REALRLIADE GIETVWKRHR DNAEYLWAGL
EDLGLTCHVP VENRLPTLTT VRIPEGVDGK AVSRQLLDEH GIEMGGGLGE LAGKVWRIGL
MGYNSRRENV DRLLSILADV LPRS
|
|---|
| |