Gene Synpcc7942_1846 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1846 
Symbol 
ID3774421 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1911978 
End bp1913807 
Gene Length1830 bp 
Protein Length609 aa 
Translation table11 
GC content57% 
IMG OID637800287 
Producthypothetical protein 
Protein accessionYP_400863 
Protein GI81300655 
COG category[R] General function prediction only 
COG ID[COG0595] Predicted hydrolase of the metallo-beta-lactamase superfamily 
TIGRFAM ID[TIGR00649] conserved hypothetical protein 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.390702 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTCTC AAAAACCCAT CATCGTCTCC AAAACCAGTG CTGCTGCTAG CTCTAGTTCT 
GACCGGCTGC GGATTATTCC CTTGGGCGGT CTTCACGAGA TTGGCAAGAA CACTTGTATC
TACGAAGTCG GCGATGAAAT TCTGCTGGTT GATGCTGGGT TAGCCTTCCC GACGGATGGG
ATGCATGGTG TAAATGTCGT GCTGCCCGAC ATGACCTACC TACGGGAAAA TCAGCATCGC
ATTAAGGCGA TGGTGGTCAC CCATGGTCAC GAAGACCACA TCGGTGGCAT TCCCTTTCAC
TTGCGTCAGC TCGACATCCC GATCATCTAT GGGCCACGTC TGGCGATGGC CTTGCTTGCC
GGGAAGTTGG AGGAAGCCGG TGTTGTTGGC CGCGCCAATG TCAAAACCGT GCAACCCCGC
GAAGTGGTGC GCATTGGTCA AAACTTCCTA GTCGAGTTCA TTCGCAATAC CCACTCGATC
GCGGACAGTT TTACGCTGGC GATTCGCACA CCCTTGGGTG TAGTGATTCA CACCGGTGAC
TTTAAGTTCG ACCACACGCC TGTGGATGGC GAAACCTTCG ACATTCAACG GCTGGCAGAT
TACGGCGAAC AAGGCGTTCT CTGTCTGGTC AGTGATTCGA CCAACGCGGA GCTTCCCGGC
TTCACGCCGT CTGAACGATC GGTTTTCCCC AATCTCGATC GTGCCTTTTC CCAGGCACAG
GGTCGCTTGA TTGTTACGAC CTTTGCCTCA TCGGTGCACC GGGTCAACAT GATCCTCGAG
CTGGCGAAGA AGCATGGTCG CAAAGTCACA GTCCTAGGGC GATCGATGCT CAACGTCATC
GCTCATGCCC GCAATTTGGG CTACATCCAT TGCAGCGATG ATCTGTTCCT GCCCCTGAAG
GAGCTACGGG ATCATCCCGA TCGCGACGTG CTGATTTTGA CCACCGGCAG CCAAGGCGAG
CCGCTGGCAG CCCTGACGCG GATTGCGCGA CAAGAGCATC CACAGGTCAA GATTCGCCAA
GGCGACACGG TGATCTTCTC GGCCAACCCA ATTCCGGGCA ACACCATCTC TGTGGTCAAC
ACGATTGACC AACTGATGAT GCAGGGTGCT CACGTTGTTT ACGGCAAGGG TGCCGGCATC
CACGTTTCGG GACACGGCTG CCAAGAAGAC CAAAAGCTGA TGATCGCGCT GACCAAGCCG
AAGTTCTTCG TGCCGGTCCA CGGCGAGCAC CGGATGTTGG TACAGCACTG CAAAACGGCC
CAATCGATGG GCGTGCCGCC GGAACACATG ATCGTGATCG ACAACGGCGA CACGGTGGAG
CTGACGCCGG AATCGATTGG TTTGGGCGAT CGCGTCACCG CTGGGATTGA ACTGGTCGAT
ACCTCTCGTA CGGGTTTGGT GGATGGCAAG GCGCTCAAAG AGCGTCAGCA GCTGGCCGAA
GACGGCTTAG TCTCCCTGTC GGCACTGGTC AATAGCCAAG GTCAACTCGT CGACGCTCCC
ACGGTTCATC TACGGGGTGT TGTCACCTCG GCAGACCCGC GTCGCGTCAG CGTTTGGGCA
CAAAAAGAAG TGGAAATGGC GCTCGACAAT CGTTGGGCTG ACTACTGTCG CCGCTTGCCC
AGTGGTGAGC TGGATGTCGA TTGGGTGGGT CTACAAGCCG AGGTCGAAGT AGGGATGCAA
CGCCGCCTCA AGCGGGAGCT GCAATGCGTG CCAATGATTC TCTGTACCTT GCAGTCAGTG
CCTAGCGTGG CAGCACAGCC CGCTGAAGAA GATAACCGCA TGCGCCGCCG CCGTTCTTCA
GCTCCGATCA AAGTGGGCGC CAAGCTCTAA
 
Protein sequence
MPSQKPIIVS KTSAAASSSS DRLRIIPLGG LHEIGKNTCI YEVGDEILLV DAGLAFPTDG 
MHGVNVVLPD MTYLRENQHR IKAMVVTHGH EDHIGGIPFH LRQLDIPIIY GPRLAMALLA
GKLEEAGVVG RANVKTVQPR EVVRIGQNFL VEFIRNTHSI ADSFTLAIRT PLGVVIHTGD
FKFDHTPVDG ETFDIQRLAD YGEQGVLCLV SDSTNAELPG FTPSERSVFP NLDRAFSQAQ
GRLIVTTFAS SVHRVNMILE LAKKHGRKVT VLGRSMLNVI AHARNLGYIH CSDDLFLPLK
ELRDHPDRDV LILTTGSQGE PLAALTRIAR QEHPQVKIRQ GDTVIFSANP IPGNTISVVN
TIDQLMMQGA HVVYGKGAGI HVSGHGCQED QKLMIALTKP KFFVPVHGEH RMLVQHCKTA
QSMGVPPEHM IVIDNGDTVE LTPESIGLGD RVTAGIELVD TSRTGLVDGK ALKERQQLAE
DGLVSLSALV NSQGQLVDAP TVHLRGVVTS ADPRRVSVWA QKEVEMALDN RWADYCRRLP
SGELDVDWVG LQAEVEVGMQ RRLKRELQCV PMILCTLQSV PSVAAQPAEE DNRMRRRRSS
APIKVGAKL