Gene Synpcc7942_1793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1793 
Symbol 
ID3774368 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1864440 
End bp1864763 
Gene Length324 bp 
Protein Length107 aa 
Translation table11 
GC content55% 
IMG OID637800234 
Productthioredoxin 
Protein accessionYP_400810 
Protein GI81300602 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3118] Thioredoxin domain-containing protein 
TIGRFAM ID[TIGR01068] thioredoxin 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value0.99578 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.00274383 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTCTGCAG CAACTGAGCT GAATGATCAG CAGTTTGAAT CTGCCGTTCT GAAAGCCCCA 
GGATTGGTTC TCGTCGATTT TTGGGCGCCT TGGTGCGGCC CTTGTCGCCT AATTGCACCG
CTGATGGACT GGGCCGCCCA GACCTATGCC GATCAACTCA CGGTCTACAA GCTGGAAGTG
GATCCGAATC CCGAGACGGT AGCTCGCTAT CAAGTTCAGG GCATTCCGAC GCTGTTGCTG
TTCCAAAACG GTGAACTGGT AGAGCGCGTC GAAGGTGCCA TTGGACGCGA TCGCATTCAG
ACCCTGATCA ACGCCCATCT CTAA
 
Protein sequence
MSAATELNDQ QFESAVLKAP GLVLVDFWAP WCGPCRLIAP LMDWAAQTYA DQLTVYKLEV 
DPNPETVARY QVQGIPTLLL FQNGELVERV EGAIGRDRIQ TLINAHL