Gene Synpcc7942_1721 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1721 
Symbol 
ID3775421 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1793212 
End bp1793916 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content55% 
IMG OID637800160 
ProductHEAT repeat-containing PBS lyase 
Protein accessionYP_400738 
Protein GI81300530 
COG category[C] Energy production and conversion 
COG ID[COG1413] FOG: HEAT repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGCGA TTGACCTTGC CCAGCTTGCG AGCCAACTGG AGAGTGAGCA ATCTCGCGAT 
CGCCTGATTG CGCTGGCTTC TCTGCGGGAC GTTGAGGCTG AGGATGCTGT CCCTTTGATC
AAAAAAGTAT TAGCTGATGA AAGCATCCAA GTGCGATCGA TGGCCGTGTT TGCGTTGGGG
ATCAAACAGA CTGCCGAGTG CCTACCGTTG TTGCTGGAAG TTTTAGAAAC CGAAGACGAC
TACGGCATTC GGGCGAGTGC GGCTGGTGCT TTAGGCTATC TCCAAGATGA TCAGGCCCTA
GAACCGCTAC TGCGCGTGTT CTATGAAGAC ACGTCTTGGC TAGTGCGTTT TAGTGCTGCG
GTAGCCCTCG GTAATCTGCA AAATCCTCGA GCTCGTGACG CTCTGATTCA GGCCTTGGAT
AGTGAGGAAG TCCTGCTGCA CCAGGCTGCG ATCGCGGCCC TCGGTGAAAT TGGTGCTGTC
GATGCCGTCG ATCAGCTGTT GCGCTTTGTG GCTGCTGAAG ACTGGCTGGT TCGTCAGCGC
TTGGCAGAGG CACTGGGAAA GCTCCCCTGC GACAAGGCCT TATCAGCGCT GCGCTACCTC
GTTAAAGATA GCCATCCTCA AGTTTCTGCG GCGGCAGAAC AAGCCTTACA ACAACTGGAA
ACAGGAACAA CGACTCAGCC TGAGAGTGAT GACTTCCCAG GATGA
 
Protein sequence
MDAIDLAQLA SQLESEQSRD RLIALASLRD VEAEDAVPLI KKVLADESIQ VRSMAVFALG 
IKQTAECLPL LLEVLETEDD YGIRASAAGA LGYLQDDQAL EPLLRVFYED TSWLVRFSAA
VALGNLQNPR ARDALIQALD SEEVLLHQAA IAALGEIGAV DAVDQLLRFV AAEDWLVRQR
LAEALGKLPC DKALSALRYL VKDSHPQVSA AAEQALQQLE TGTTTQPESD DFPG