| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1635 |
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| Symbol | |
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| ID | 3775705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 1702823 |
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| End bp | 1704469 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637800072 |
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| Product | porin; major outer membrane protein |
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| Protein accession | YP_400652 |
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| Protein GI | 81300444 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00492408 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.132701 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATC TGTTCAAGGT CATGTTGGCT GGCCCTCTGG CCGCTAGCGT TGCTTTTGCA
GGCGCAGCCC AAGCGGAAAG CCTGAACCGC GACACGATTA ATCAGGTCAA CGCGATCGCT
AATGAAGAGC TGCCTGCAGC CCAAGTCACT TCGATCACTC AGCTGAGTGA TGTCAAACCG
ACCGACTGGG CTTACCAAGC ACTGCAATCG CTGGTTGAGC GCTATGGCTG TATCGTTGGT
TATCCCGATC GCACCTATCG CGGGAGCCGC GCTCTGACTC GCTATGAATT TGCAGCGGGT
TTGAACGCCT GTCTCGACAA AGTGATTGAA TTTGCCGCCT CCAAAGAAGA CCTCGACACC
CTCAAAAAGC TGACAGAAGA GTTTCAGTCT GAGCTAGCAA CCCTGCGCGG CCGCGTCGAT
GGACTCGAAG CACGGGTCAC GGAACTCGAA GCCACTCAGT TTTCAACCAC GACCAAACTG
CAAGGCGACG TACTGTTCAG CCTCGATCGC GCCTTTGGTC CCAGTGGCTT GGATACCGGC
ACCTCTTTCT CACAGCGGGT TGGTCTAGAT TTCAACACCA GCTTCACTGG TAAAGACCTG
CTCAAAACCC GCCTCGAAAC CAACAGCATT ACCTCACCTG GCCTGCGTGA TCTGAATGGG
TTTGCTGCGG GCGCAGGCAT CCCGAGTCCC GGGGCAGCCT TGGCCTACGA CAATGCGGCA
ACAGGAGCAG ACCCCAACTT CACGCTCAAC ACCCTGATTT ATCAGTTTCC GGTTGGCTCT
GTGAACTTCA CGGTTGGCAC CTCCAACGTG CAAGTCGATG ATGTGTTCTC CACCAACGGC
TCCTTCTACG CCCCCGAATT GTCTTACTTC TTCAACAATC CAGTGCCGGG TATCTACAAC
GATGCCGACA CCTCAAACTC TGCTGGGGCT GGCTTCAATT GGCAAATCAA TCCCAACTTC
AATCTTGGGT TGGCCTACAT CAACCAACAG GGGCCGACTT CTGGCCAGAA CTTAGAGGCC
GATCCAACGG CTGGGGTCTT TGGAGCCGAC TCACAAACCA CGGCGCAACT GGCCTTCAAA
AATGATGATG GTACCTTCAT CGGGGCCTTG GCCTATGCCT ATCGCAAAGG ACCAGCCTTT
GATCCTGTCA ATCCTGATGG CGTCGGCTTA CCGGCTCAGT TTGGCGGGGT CTCCTATGGC
ACAGTGCGAT CGCTGATTGG ACCCTCCAAT TCACCAACGG ATCTGATCAG TAGCAACAAC
ATCGGTTTGA GCCTAGGGTG GGCAGTCAGT GAGAACTTTA CGATCAGTGG TTCCTATGGC
ATCAGCTTTC TCAGTGGTTC AGCAGGGAGC TCGACGGTTC AGTCATGGAA TATCGGCTTG
ACCTTCCCGA ACCTATTTGC GGATGGCAAT GAATTGGGCT TGGCAATCGG TCAAATTCCC
TACGTCACCA GTGATAGCCG AGGTGCAGCT TTTGCCGATA GTGGGCCATT TGCCTTTGAG
GTCTATTACA AGCTGCAACT GACTGACAAT ATCGCCATCA CGCCTGCCCT CTATGCTGTC
ACGAATGCAG GGGGCGGACT CACCCTTGGG AACCTTGCGA ATGGCGACTA TTGGGTGCCA
GTACTCAAGA CCGAGTTCTT GTTCTAG
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| Protein sequence | MKNLFKVMLA GPLAASVAFA GAAQAESLNR DTINQVNAIA NEELPAAQVT SITQLSDVKP
TDWAYQALQS LVERYGCIVG YPDRTYRGSR ALTRYEFAAG LNACLDKVIE FAASKEDLDT
LKKLTEEFQS ELATLRGRVD GLEARVTELE ATQFSTTTKL QGDVLFSLDR AFGPSGLDTG
TSFSQRVGLD FNTSFTGKDL LKTRLETNSI TSPGLRDLNG FAAGAGIPSP GAALAYDNAA
TGADPNFTLN TLIYQFPVGS VNFTVGTSNV QVDDVFSTNG SFYAPELSYF FNNPVPGIYN
DADTSNSAGA GFNWQINPNF NLGLAYINQQ GPTSGQNLEA DPTAGVFGAD SQTTAQLAFK
NDDGTFIGAL AYAYRKGPAF DPVNPDGVGL PAQFGGVSYG TVRSLIGPSN SPTDLISSNN
IGLSLGWAVS ENFTISGSYG ISFLSGSAGS STVQSWNIGL TFPNLFADGN ELGLAIGQIP
YVTSDSRGAA FADSGPFAFE VYYKLQLTDN IAITPALYAV TNAGGGLTLG NLANGDYWVP
VLKTEFLF
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