Gene Synpcc7942_1081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1081 
Symbol 
ID3775030 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1093131 
End bp1093832 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content49% 
IMG OID637799506 
Producthypothetical protein 
Protein accessionYP_400098 
Protein GI81299890 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0569] K+ transport systems, NAD-binding component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.00425328 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTGTTC AGCAAAGTAC TTGGAAATTC TTGCGCCGTC TCTCAAAAGA TCGTAAACAG 
TATGCTGTGA TTGGCCTCGG CCGTTTTGGA AGCGCGATTT GTAGAACCTT GCATGAGTTG
GGTCATGAAG TTCTAGGCAT TGATCACGAT CACGAAGTGG TTAATGCAGC ACTTGAGTCC
GGTGCTCTCT CCCATGGCTT ATCTTTGGAT ACAACCGATT ATTCAGCTCT GCAAGAAGCG
GGGGTTCTCG AATTTGATGT AGTGATTGTC GCAATTGGAA GCTACATCGA AGCCAGCATC
ATTACAACGC TCAACCTCAA AGAAGGAAAA GTACCCCACG TTATCTCTAA AGCTTCTACC
AGTGTCCATG GCAAGCTGCT AGAGCGCGTC GGCGCGGATC TCGTCATTTT CCCTGAAGAT
GAAATGGGTG CTCAGCTAGC GCGATCGCTC ACTGCTCCCG CCGTCTTAGC CCGCTTTGAT
CTCTCCCCTG ATCACAGTCT GGTTGAAGTT CATGTGCCAT CTCCATTTAT TGGACAAAGT
TTGTCGCAGC TGGCTTTGCG TAGTCGTTAC AACGTCACTC TCTTAGCGAT TCAGCGCGGT
GAAGAGCTAA TCGTTAATCC TCACCCAGAC ACCGAATTAG CTGAGGCAGA TGCCTTGATC
GTTGTCGGTG AAAATCAAGC ACTTAGTCAA CTCCCTCAAT AG
 
Protein sequence
MTVQQSTWKF LRRLSKDRKQ YAVIGLGRFG SAICRTLHEL GHEVLGIDHD HEVVNAALES 
GALSHGLSLD TTDYSALQEA GVLEFDVVIV AIGSYIEASI ITTLNLKEGK VPHVISKAST
SVHGKLLERV GADLVIFPED EMGAQLARSL TAPAVLARFD LSPDHSLVEV HVPSPFIGQS
LSQLALRSRY NVTLLAIQRG EELIVNPHPD TELAEADALI VVGENQALSQ LPQ