| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0889 |
|---|
| Symbol | |
|---|
| ID | 3774066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | - |
|---|
| Start bp | 894636 |
|---|
| End bp | 896453 |
|---|
| Gene Length | 1818 bp |
|---|
| Protein Length | 605 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637799305 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_399906 |
|---|
| Protein GI | 81299698 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4632] Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.914068 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.000140666 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCTG CGCTGAGACG TGGATTGGTC TGGATTGGTT GCACCGTCAG TAGTTGGGGT
GGGCTTGTTC TTCCGTCAGC TTGGAGCCCT GCAGCGATCG CCCAGACACG AGCTGCCACC
AATCAAACCG GGATGCAACT CCAGATCAAT GGTCGGGCGA TCGCCGGCCA GTGGGTCGTA
GAACCAGCTT CCCAGGGCAG CTTTATCTGG ATTGAAGAAG TTGCGCTGCG CAACGGCCTT
GGCTTGGAAC TATTACCGGG CTTGAGTACC ACTCGCCAAG CGATCCGCTG GTTCTCGGAT
GGACGTGTGG CTGAAGGGGT GGAGCAAGTG CCCGCCCGTC GTCAAAATGG TCGGCGTTTC
TTAGAAGTGT CATCGCTGGC GCGTCGCAGT GGTTGGTCCC TGGCAGTACT GGCAGACCAA
CTGGTGATTC AACTGCCGGC GGCGACGCTC CGGAATCTCA GGGATGGCCA ACAGGGAGCT
AACCGCCGCC TCGTCTTGGA TTTCGATCGC CCAACCCCAT GGGAGTGGGA TGCAATCGGC
CAACAGCTCC GCTTTGATGG TTCAGTTCCT GCTCAGTTGG TGCCCAGTTT GCAGCGCTAC
GGCATTCAGG CAGAGCAACA GGGCGATCGC ACGAGCCTAC GATTACCGGC TGGTCTGGGG
GTCCGCGTCT CGAGCTTGGG ATCGCCTGAT CGCATCTTTA TCGACCTGCC AACTACCACC
GGCCTCCTCA GCCCGCCCGC TGGTCTGGGG AGTAATCCCG CCCCCTTGAC TCCCGCCCCA
CCTGACCTAG CGGGTACGCA ACTGCAGCAG CGTCAAGTCA CTGTTGACGG CGCGACCTTC
CCCGTCTTTG TGATTCAGTT GGACCTGCGC CAACCTAATG TTCGTCTCGC ACCGATTTGG
GCAGGCAATG GCTCACTGGA GGGCACACAG GTTTTGCAAG CTGTGGCTCG CGATCGCGGG
GCTGCGATCG CCATCAATGC GGGCTTTTTC AACCGCAATA ATCGTCTGCC ACTCGGGGCG
ATTCGCCGTG ACAACATCTG GTATTCCGGT CCGATCCTCA ACCGTGGGGC CATGGCTTGG
AATGATCAGG GCGAAGTGCT GATTGACCGG CTCGGTCTGC AAGAGACCCT GCAACTCAGC
TCTGGCACTC GCATTCCCCT CGTGGCGCTC AATAGTGGCT ACGTTCGCGC TGGAGCCGCT
CGCTACACCG AGGCTTGGGG CAACAGCTAC CAGACAATCC TCGACAACGA AGTAGTGGTG
ACAGTCCAGG GCGATCGCGT GGTCTCCCAG TCCCAAGCGG ACAAGGCTGG CAGCAATCGC
TTTACGATTC CCCGCAATGG CTACCTGATC GTCTTGCGAT CGGCCAATAG CCTGCGCACT
TCTCTGGTGA ACGGCACGAC AATTCAAGTC CTACAGCAAG CGCAACCCAG CCAGTTCGAT
CGCTTCCCCC ATGCTCTAGG AGGAGGGCCA CTCCTCGTCA AATCAGGGCG AGTGGTCGTC
AATCCCCAAG CCGAAGGATT TAGCCGAGCC TTTGAGATCG AAGCAGCTCC GCGCAGTGCG
ATCGGTCTGA TGCCGGATGG CCGCTTGGTT CTAGTGGCTG CCCACGAGCA AAACCAAGGC
CAAGGCCCCA CCCTGCCTCA AATGGCTGCG ATTATGCAGC AGCTCGGCGT CGTTGATGCC
CTCAACTTTG ATGGCGGCAG CTCCACTTCT CTAATCGTCA ATGGTCAGCT CGTCAATCGG
GCTCGAGGCA GTGCTGCCCG GGTTCACAAC GGGCTCGGGG TCTTCCTGGG GCCGACTACG
CCGGCCAGTC TGCGATGA
|
|---|
| Protein sequence | MKPALRRGLV WIGCTVSSWG GLVLPSAWSP AAIAQTRAAT NQTGMQLQIN GRAIAGQWVV
EPASQGSFIW IEEVALRNGL GLELLPGLST TRQAIRWFSD GRVAEGVEQV PARRQNGRRF
LEVSSLARRS GWSLAVLADQ LVIQLPAATL RNLRDGQQGA NRRLVLDFDR PTPWEWDAIG
QQLRFDGSVP AQLVPSLQRY GIQAEQQGDR TSLRLPAGLG VRVSSLGSPD RIFIDLPTTT
GLLSPPAGLG SNPAPLTPAP PDLAGTQLQQ RQVTVDGATF PVFVIQLDLR QPNVRLAPIW
AGNGSLEGTQ VLQAVARDRG AAIAINAGFF NRNNRLPLGA IRRDNIWYSG PILNRGAMAW
NDQGEVLIDR LGLQETLQLS SGTRIPLVAL NSGYVRAGAA RYTEAWGNSY QTILDNEVVV
TVQGDRVVSQ SQADKAGSNR FTIPRNGYLI VLRSANSLRT SLVNGTTIQV LQQAQPSQFD
RFPHALGGGP LLVKSGRVVV NPQAEGFSRA FEIEAAPRSA IGLMPDGRLV LVAAHEQNQG
QGPTLPQMAA IMQQLGVVDA LNFDGGSSTS LIVNGQLVNR ARGSAARVHN GLGVFLGPTT
PASLR
|
|---|
| |