Gene Synpcc7942_0854 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0854 
Symbol 
ID3774031 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp850233 
End bp852629 
Gene Length2397 bp 
Protein Length798 aa 
Translation table11 
GC content57% 
IMG OID637799270 
Producthypothetical protein 
Protein accessionYP_399871 
Protein GI81299663 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4354] Predicted bile acid beta-glucosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.50872 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.00887321 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACCTATG AACTGCCCGC TGCTGCCTGG CGCCGACCCC TTGGTCTGGG CTGGGAAAAA 
CCGTATACCG TTCGCTACGC CAGCAATCTG GATGATGGGC CTTGGCATGG TGCGCCGCTG
GGCGGATTTG GTGCGGGTTG TTGGGGGCGA TCGCCGCGCG GCGACGTCAC GCTCTGGCAT
TTAGACGGCG GCGAGCATTG GTATGGCAGC ATTCCTGCCT GTCAGTTCGC GGTCTATGAA
AGTGGCACGG GTGCCTACGC GCTCAGTACC GAAGCGCCGA GCGATGGCAG CCTCAGTAGT
TGGAACTGGT ATCCCGCCAG CACGGCAGAG CGATCGACCG GAGAATACAG CGCCCTCTAC
CCACGCAGCC AGTTCAGCTA TCAGCAGGTG TTTGAGGCAG AGATTCACTG CCGCCAGTTC
TCGCCAATTC TGCCCCACGA CTATCAGGCG ACCAGCTATC CGACCGCAAT TTTTCGTTGG
CAGCTCCACA ACCCCAGCGA TCGCCCCCTG ACGATCAGCA TTCTGCTGAG CTGGGAAAAT
CTTTGTGGCT GGTTCACCAA CACTAACAAA GCGCCGGAAG TCGTCTACCG GGATGATGGT
AGCCCTGTCT ATGACTACGT TCCCGCGTTA GGCCAGAGTG TAGGCAATCT CAATCAGCGG
ATTGCAGGCG AAGGCTGGCA GGGGCTGCTG CTGGATCAAA CGCGATCGCA AGATCCTGAG
GAAGGGGATG GGCAATGGGC GATCGCCATT GCTGAGGCAG AAGGACTGGA GATTTTCCGC
TGCGATCGCT GGGATCCGAC AGGTGACGGA TCGGAGTTGT GGCAATCCTT TGCGCTGGAT
GGCTCAATTC CAGATCGCCA GGATTCTCAG CCGGCAGCAG CGGGTGAGCG ATTGGCGGGT
GCGATCGCTG TTCGGCTGAC GCTACAGCCG GGCGAAAGCC GCGAAATTCC CTTCAGCATC
GCTTGGGACC TGCCGGTCAC TGAATTTGCG GCAGGTGTGA AAGCCTTCCG GCGCTATACC
GACTTCTTTG GGCGTGACGG TCGTAATGCG GCCGCGATCG CCGCCACGGG GCTGAAGCAC
TACGACGAGT GGGAACAGGC GATCGCTGCT TGGCAACAAC CGATTCTCGA TCGCGATGAC
CTCTCCGATA CTTTCAAGCT GGGACTGTTC AACGAACTCT ATGACCTCTG TAGTGGCGGC
AGTTTGTGGA CAGCAGCCAG CGAAGCCGAT CCAGTCGGGC AGTTCGCTGT TTTGGAATGC
CTGGATTACG CCTGGTACGA GAGTTTGGAT GTGCGGCTCT ACGGCGCTTT TGGGCTGCTG
ATGCTCTGGC CAGAGCTAGA AAAAGCGGTG ATGCGAGCCT TTGCGCGGGC GATTCCCCAA
GCTGACGATC GCACGCGGGT GATTGGCTAC TGGTTCACGA TTGGCCAAGA AAGTCCGCTA
GCGAAACGCA AGTTGGCGAA TGCGACGCCC CATGACTTAG GCGCACCGAA TGAGTCGCCA
TGGTTGCAGA CCAACTACAC CGGCTATCAA GATTGCAACC TTTGGAAGGA TTTGGGCTGT
GATTTTGTCC TGCAGGTCTG GCGTGATTAT CAACTGACTG GTTCGAGCGA TCGTGGGTTC
CTGTCGGACT GCTGGCCAGC TGCCGTAGCG GCACTGCGCT ATCTCAAGGA CTTTGATCTG
GATGGTGATG GCATTCCCGA GAATAGCGGT GCGCCGGATC AAACTTTTGA TGATTGGCGC
TTGCAAGGCA TTAGTGCCTA CTGCGGTGGG CTCTGGATTG CAGCGCTGGA GGCTGCTCTC
GCGATCGCTG ATGTTTTGGA GTTGTCAGCA GAAGACCGCG ATCGCCAAGA CTTCCAATCC
TGGCTAGCAC AGGCGCGATC GCTCTATCAC GACACCCTTT GGAATGGCCG CTATTACCAA
CTCGATAGCG GCAGCGGTAG CCAAGTCGTG ATGGCGGATC AACTCTGCGG TGACTTTTAT
AGTCGGCTAT TGCAGTTACC GCCGGTCGCT CCGCTGGAAG CCGCGCAATC CACAGCTGAT
ATGGTCTATG AGGCTTGCTT CCAGAAGTTT CATAGCGGTC AATTTGGTTT AGCCAATGGC
CTGCTGCCAG ATGGTTCGCC AGTAGATCCC AAGGGTACGC ACCCGCTGGA AGTGTGGACA
GGAATTAACT TTGGCATTGC TGCCTATTGG TTGCTGCTAG GTCACCGCGA TCGCTGTTTT
GAAGTGACAG AGACGGTCAT TCGCCAAATT TATGACAACG GCTTACAGTT TCGTACGCCG
GAAGCGATCA CTGCCAATGC AACGTTTCGC GCTAGCCACT ATCTCCGGCC AATGGCAATT
TGGGCAGTTT ATGGTGTGCT AACTAACTTT TCTCCAGTTG ATCAACAACC CGTCTAG
 
Protein sequence
MTYELPAAAW RRPLGLGWEK PYTVRYASNL DDGPWHGAPL GGFGAGCWGR SPRGDVTLWH 
LDGGEHWYGS IPACQFAVYE SGTGAYALST EAPSDGSLSS WNWYPASTAE RSTGEYSALY
PRSQFSYQQV FEAEIHCRQF SPILPHDYQA TSYPTAIFRW QLHNPSDRPL TISILLSWEN
LCGWFTNTNK APEVVYRDDG SPVYDYVPAL GQSVGNLNQR IAGEGWQGLL LDQTRSQDPE
EGDGQWAIAI AEAEGLEIFR CDRWDPTGDG SELWQSFALD GSIPDRQDSQ PAAAGERLAG
AIAVRLTLQP GESREIPFSI AWDLPVTEFA AGVKAFRRYT DFFGRDGRNA AAIAATGLKH
YDEWEQAIAA WQQPILDRDD LSDTFKLGLF NELYDLCSGG SLWTAASEAD PVGQFAVLEC
LDYAWYESLD VRLYGAFGLL MLWPELEKAV MRAFARAIPQ ADDRTRVIGY WFTIGQESPL
AKRKLANATP HDLGAPNESP WLQTNYTGYQ DCNLWKDLGC DFVLQVWRDY QLTGSSDRGF
LSDCWPAAVA ALRYLKDFDL DGDGIPENSG APDQTFDDWR LQGISAYCGG LWIAALEAAL
AIADVLELSA EDRDRQDFQS WLAQARSLYH DTLWNGRYYQ LDSGSGSQVV MADQLCGDFY
SRLLQLPPVA PLEAAQSTAD MVYEACFQKF HSGQFGLANG LLPDGSPVDP KGTHPLEVWT
GINFGIAAYW LLLGHRDRCF EVTETVIRQI YDNGLQFRTP EAITANATFR ASHYLRPMAI
WAVYGVLTNF SPVDQQPV