| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0697 |
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| Symbol | |
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| ID | 3775867 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 689222 |
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| End bp | 690748 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637799109 |
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| Product | photosystem II core light harvesting protein |
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| Protein accession | YP_399716 |
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| Protein GI | 81299508 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03039] photosystem II chlorophyll-binding protein CP47 |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00000016119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0946335 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGACTAC CCTGGTACCG TGTCCACACG GTCGTCCTCA ATGATCCGGG ACGACTGATT
GCAGTGCACT TGATGCACAC TGCCCTCGTG GCAGGTTGGG CAGGTTCGAT GGCTTTATAC
GAACTTGCCA TTTTTGATCC TTCTGATGCC GTGCTGAACC CCATGTGGCG GCAAGGCATG
TTCGTGTTGC CGTTCATGGC GCGTTTGGGC GTCACCCAAT CTTGGGGTGG CTGGAGCATC
ACCGGCGAAA CCGCCGTGGA TCCTGGCTAT TGGAGCTTTG AAGGCGTCGC GATCGCCCAC
ATCGTACTGT CGGGTCTGCT GTTCCTCGCA GCAGTCTGGC ACTGGGTCTA CTGGGACCTC
GAACTCTTTA CCGATCCCCG CACCGGCGAA CCGGCCTTGG ACCTGCCAAA AATGTTTGGC
ATCCACCTGT TCCTCTCCGG TCTTCTTTGC TTCGGCTTCG GTGCTTTCCA CCTGTCTGGC
CTCTGGGGCC CGGGGATGTG GGTCTCCGAT CCCTACGGCT TGACCGGCCA TGTCCAACCA
GTTGCCCCGG CCTGGGGTCC TGAAGGCTTC AACCCCTTCA ATCCGGGTGG CATTGTGGCT
CACCACATTG CAGCCGGTGT CGTTGGCATC GTCGCAGGCC TCTTCCACCT GACGGTTCGT
CCCCCCGAGC GCCTCTACAA AGCGCTGCGG ATGGGCAACA TCGAAACCGT CTTGTCGAGC
TCCTTGGCAG CAGTCTTCTT CGCTGCTTTT GTGGTCGCTG GCACGATGTG GTACGGCAAC
GCTGCCACGC CAGTCGAACT GTTTGGCCCA ACTCGCTACC AGTGGGACCA AGGCTACTTC
CGTCAGGAAA TTGCCCGCCG GGTTGATACG GCTGTCGCCA GTGGCGCTTC TCTAGAGGAA
GCTTGGAGCT CCATTCCTGA AAAACTGGCC TTCTATGACT ACGTCGGCAA CAGCCCTGCT
AAAGGTGGCT TGTTCCGTAC CGGTCAGATG AACAAAGGTG ACGGGATTGC CCAAGGCTGG
CTCGGCCACG CTGTCTTCAA GGACAAAAAT GGCGATGTGC TCGACGTCCG TCGCTTGCCG
AACTTCTTCG AGAACTTCCC GATCGTCTTG ACTGACAGCA AAGGTGCTGT GCGGGCAGAC
ATTCCTTTCC GTCGTGCTGA AGCGAAATTC AGCTTCGAGG AAACCGGAAT TACGGCTAGC
TTCTACGGCG GTTCTCTGAA TGGCCAAACC ATCACTGATC CGGCGCAGGT GAAGAAATAC
GCCCGTAAGG CTCAGTTGGG TGAAGCGTTC GAATTCGACA CCGAAACCCT TAACTCGGAC
GGTGTGTTCC GGACTTCGCC GCGTGGCTGG TTCACCTTTG GTCACGCCAG CTTTGCTCTG
CTCTTCTTCT TTGGCCATAT CTGGCACGGC TCTCGGACGC TGTTCCGCGA TGTCTTTGCT
GGGATTGAAG CCGACTTGGG CGAGCAGATT GAATTCGGGG CCTTCCAGAA ATTGGGTGAC
CCGACCACTC GGAAAACAGC CGCTTAA
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| Protein sequence | MGLPWYRVHT VVLNDPGRLI AVHLMHTALV AGWAGSMALY ELAIFDPSDA VLNPMWRQGM
FVLPFMARLG VTQSWGGWSI TGETAVDPGY WSFEGVAIAH IVLSGLLFLA AVWHWVYWDL
ELFTDPRTGE PALDLPKMFG IHLFLSGLLC FGFGAFHLSG LWGPGMWVSD PYGLTGHVQP
VAPAWGPEGF NPFNPGGIVA HHIAAGVVGI VAGLFHLTVR PPERLYKALR MGNIETVLSS
SLAAVFFAAF VVAGTMWYGN AATPVELFGP TRYQWDQGYF RQEIARRVDT AVASGASLEE
AWSSIPEKLA FYDYVGNSPA KGGLFRTGQM NKGDGIAQGW LGHAVFKDKN GDVLDVRRLP
NFFENFPIVL TDSKGAVRAD IPFRRAEAKF SFEETGITAS FYGGSLNGQT ITDPAQVKKY
ARKAQLGEAF EFDTETLNSD GVFRTSPRGW FTFGHASFAL LFFFGHIWHG SRTLFRDVFA
GIEADLGEQI EFGAFQKLGD PTTRKTAA
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