| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0569 |
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| Symbol | |
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| ID | 3774807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 550718 |
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| End bp | 551653 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637798977 |
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| Product | DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like |
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| Protein accession | YP_399588 |
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| Protein GI | 81299380 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.00544782 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAACGTAC AGGAACGCCG AAACCTGAAC GCAGCGGTTG AGCGACACAC CAGTGATCAT
GTCAGCTGGT ATCTCAGTTC AATCGGTAGA ATTCCGCTCC TCACTGCCGA GGAAGAGGTT
GAACTCTCAC GCAAGGTTCA ACTGATGATG GCATTGTTGG AAAACCCAGA TGCCGAGAGC
AATTCAGAGA ACCAAGCGGT CTTACAGGCC GGTCAAAGAG CGAAAACAAA AATGCTCAAA
GCCAACCTCC GGTTGGTTGT GAGTGTTGCG AAGAAATACC AGAATCAAGG CCTAGAACTA
CTCGACTTGA TCCAAGAAGG GTCACTTGGT TTAGAGCGAG CAGTTGAAAA ATTTGACCCA
GCCTTGGGTT ATAAATTCTC GACCTACGCT TACTGGTGGA TTCGCCAAAG CATGACTCGG
GCGATCGACA ATCATGCCCG CACGATTCGT CTTCCCATTC ATGTCAGCGA GAAAATTAGC
CGCATCAAAA AAATGACGCG AGAGCTGACT CATCAGCTCA AGCGATTGCC CAGCCGTGCC
GAAATCGCTG AGGCGTTAAA GTTGCCGCTT CAAGATGTAG AAATGCTGCT CAGCCAATCG
ACCCCCTGCA CCAGCTTGGA TGCCCAAGCA CGGGGCGACG ATGGCCGCAG CTTCTTGGGA
GACTTGATTC CGGATCCCAA GAGTCTAGAG CCGATGGACG CCATGGATCG CCACATCCAG
CACGAGCAAA TCTCGACTTG GTTGGCACAC CTGACCGAAC GTGAGCAGCA GGTCTTGCAA
CTGCGCTTTG GTCTCCACGA CGGCGAGCAA CACACCTTGG CGGAAATTGG TCGGCGGCTG
AATGTGTCCC GCGAACGGAT TCGTCAAGTT GAAGCTCGGG CACTGCAAAA ACTGCGGGTC
TTGAGTCAAC AACCGCTTTG CCCAGAGGCT TGCTAG
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| Protein sequence | MNVQERRNLN AAVERHTSDH VSWYLSSIGR IPLLTAEEEV ELSRKVQLMM ALLENPDAES
NSENQAVLQA GQRAKTKMLK ANLRLVVSVA KKYQNQGLEL LDLIQEGSLG LERAVEKFDP
ALGYKFSTYA YWWIRQSMTR AIDNHARTIR LPIHVSEKIS RIKKMTRELT HQLKRLPSRA
EIAEALKLPL QDVEMLLSQS TPCTSLDAQA RGDDGRSFLG DLIPDPKSLE PMDAMDRHIQ
HEQISTWLAH LTEREQQVLQ LRFGLHDGEQ HTLAEIGRRL NVSRERIRQV EARALQKLRV
LSQQPLCPEA C
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