Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_0277 |
Symbol | ligA |
ID | 3773839 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | - |
Start bp | 271493 |
End bp | 273532 |
Gene Length | 2040 bp |
Protein Length | 679 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637798683 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_399296 |
Protein GI | 81299088 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCTT CTCAGACGGG CCCGACCACC ACCGCGATCG CCCAGCGCGC CAGCGAATTG CGACAGCTGT TGCAGCAGGC CAGCTATGCC TACTACGTCC TCGATCAGCC GGTGATGGAA GATGCGGTCT ACGATCGCCT CTATCGGGAG TTGCAAGATC TAGAGCAGCA ACACCCCAGC CTGATTACGC CCGACAGCCC CACGCAGCGC GTGGGTGAGC AACCGGCAAC TGGTTTCGAG AGTGTCCAGC ATCGGATTCC GCTCTACAGT CTCGAAAATG CTTTTGATGC TGAAGAGTTA CGGTCTTGGG ATCAGCGCTG GCGTAAACTC GCGCCCGATG TTCCGGCTGA TGCAGGCTAC GTCTGTGAAC TGAAAATTGA TGGAGCCGCG ATCGCTCTCA GCTACGAAAA CGGTCTGCTG GTGCGGGGTG CAACTCGGGG CGACGGCACC CGTGGCGAAG AAATCACAGC GAATCTACGC ACGATTAAAA GCATTCCACT GCGGCTCCAA ACCGACCAAC CGCCCGAGTG GTTAGAAGTG CGGGGCGAAG CTTTTCTGTC TCTGACTCGC TTTAAGCAAC TCAACACCGA ACGGGAGAAG CATGGTGAGG CTCTTTTTGC CAACCCGCGT AACGCCGCCG CCGGAACCTT ACGCCAACTG GATCCTCGCA TTGTCGCCGA ACGTCAGCTC GACTTTTTTG CCTACTCGAT TCAAGGGCCT AATGACTGGG CAAACCTTGA CCAAGCCGCC AGCCTCGATT GTCTTCAGAG TCTGGGCTTT CGAGTCGAAC CGCACCGCCA AACCTGCCCA ACGCTAGCAG AAGTGGAGCA GTACTTCAGC GATTGGGATG CCCGCCGCCG CGACCTGCCC TATCTCACCG ATGGCGTGGT TGTGAAACTG CAATCACGCC GCCTGCAAGA CGAGCTGGGC TTCACCCAGA AATTTCCACG CTGGGCGATC GCCCTCAAAT ATCCAGCCGA CGAAGCGCCG ACCCAACTGC AGCACGTCAC TGTCCAAGTT GGGCGAACGG GAGCACTGAC GCCTGTGGCT GAATTTTCTC CCGTTGCATT GGCGGGAACC ACCGTCAGCC GCGCCACCCT CCACAACGCC GATCGCTTGC GGGAACTCGA CTTACACATT GGCGACACGA TCGTGGTGCG CAAGGCGGGC GAAATCATTC CCGAAGTCGT GCGCGTCCTC ACTGACCTGC GGCCGGCCGA TGCTAAACCT GTCGTGCTGC CGGAGAAGTG TCCTGAATGT GGCCAGCCGG TGCAACGGCC TGAAGAAGAA GCCGTCACCC GCTGCGTTAA CTCAACCTGT CCTGCGATCG TGCGGGGGGC ACTGACCCAT TGGGCCAGCC GGGATGCCCT CGACATCGAA GGTCTAGGCG AAAAGCTCGT CGATCAACTG GTCAGCAAAG GACTCGTCAA CGCGATCGCC GACCTCTATC GACTGGATGC TCCGCTCCTC GCCAGTCTGG AGCGCTTTGG TGAAAAGTCG GCACAGAATT TGGTTCAGGC GATCGCAAAG TCACGCCAGC AACCTTGGTC GCGAGTGCTC TACGGTCTCG GGATTCGTCA TGTGGGATCC GTCAACGCCA AAAATCTGGC AGCCACTTTC ACCTCAGCTG AGGCTCTCGC GCAAGCAACA CCGGACGAAC TGGCCGCTGT CTATGGCATT GGCAGCGAAA TCGCCGACGC GGTTCACCAG TGGTTCACCG TTGCCACGAA TCAAAATCTG ATTGCAGCGC TAGAGCAAGC TGGGCTGCAA CTACATGGGG AAGCAGCGAG CCCGCGATCG CAAGCTTTGG CCGGTCAAAC CTTTGTCCTG ACTGGCACGC TGCCGACCCT GAGCCGAAAC GAAGCCAAAG CCTTGATTGA AGCGGCGGGC GGCAAAGTCT CGGGCTCCGT CAGCAAGAAA ACCAGCTATG TTGTCGCCGG CGAAGAAGCG GGAAGCAAGC TGGAAAAAGC GATCGCCCTC AACATTCCCC AACTCAACGA AACACAACTG CTGGACTTGC TTGCCCAAGC AGAGGGGTAG
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Protein sequence | MTASQTGPTT TAIAQRASEL RQLLQQASYA YYVLDQPVME DAVYDRLYRE LQDLEQQHPS LITPDSPTQR VGEQPATGFE SVQHRIPLYS LENAFDAEEL RSWDQRWRKL APDVPADAGY VCELKIDGAA IALSYENGLL VRGATRGDGT RGEEITANLR TIKSIPLRLQ TDQPPEWLEV RGEAFLSLTR FKQLNTEREK HGEALFANPR NAAAGTLRQL DPRIVAERQL DFFAYSIQGP NDWANLDQAA SLDCLQSLGF RVEPHRQTCP TLAEVEQYFS DWDARRRDLP YLTDGVVVKL QSRRLQDELG FTQKFPRWAI ALKYPADEAP TQLQHVTVQV GRTGALTPVA EFSPVALAGT TVSRATLHNA DRLRELDLHI GDTIVVRKAG EIIPEVVRVL TDLRPADAKP VVLPEKCPEC GQPVQRPEEE AVTRCVNSTC PAIVRGALTH WASRDALDIE GLGEKLVDQL VSKGLVNAIA DLYRLDAPLL ASLERFGEKS AQNLVQAIAK SRQQPWSRVL YGLGIRHVGS VNAKNLAATF TSAEALAQAT PDELAAVYGI GSEIADAVHQ WFTVATNQNL IAALEQAGLQ LHGEAASPRS QALAGQTFVL TGTLPTLSRN EAKALIEAAG GKVSGSVSKK TSYVVAGEEA GSKLEKAIAL NIPQLNETQL LDLLAQAEG
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