| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0142 |
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| Symbol | secD |
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| ID | 3773482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 143572 |
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| End bp | 144966 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637798548 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_399161 |
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| Protein GI | 81298953 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAAAAC AGCAGAGTCC GCTGATCTTA ATTCTGGCCT TGGTAGCCGC TGCCATCTTT
GTCTTGGTGC AGCTCCCGAT TCGCCTCGGT CTCGATCTCC AAGGGGGCTC GCAGTTAACC
ATTCTGGTTA AGCCCACAAC CGAAATCCCC TCAGTGGGCG ATCGCGAGCT TGAAGCCGTT
CAGCGCGTGA TCGAAAATCG GGTCAACGGG CTGGGTGTGT CGGAAGCGGT GATCCAAACC
GCTGGCAGCG ACAAGATCTT GGTTCAACTG CCGGGCGTCA GCAATCCCGA ACAAGCAGAA
CGGGTGCTTG GCGGAACGGC TCAGCTGGAA TTCCGGGAGC AAAATCCGGG AACCGAAGCG
CAGGTGACAC CGCTGCAGCA GCTCGTCTCC CAAGCGCGAG GCGCCCTAGA GATCGAGCGA
CGCAATGGCG ATCCGACCAA GGTTGCGGAG CTGGAGCAAA CCCTTGAGCG ATCGCAGGTA
GAACTTGCCA AGTTTTTTGG CCCTGCCCAA ATCACTGGCA AATCCCTGAA GGATGCCCTC
GCTCAGCCCA CTCAGACGGG GAATACCTGG GAAGTGGCCC TACGCTTCGA TACCGAGGGC
GGTGACCAGT TTGCAGCGCT GACCAAAAAT TTGGCGGGCA CCGGTCGCAG CATCGGCATT
TTCTTGGATG GTGTCTTGAT CAGTGCGCCA GTGGTTGGGC CAGAGTTTGC CCAAACTGGG
ATCACCGGAG GCAGCGCCGT CATTACTGGC CGCTTTACGA CCGAGCAGGC AGAGGATCTG
GCAATTCAGT TACGGGGCGG CGCACTGCCC CTGCCGGTTG AAATCGTCGA AAACCGCACC
GTCGGTGCCA CCCTCGGTCG AGACAGCATC CAACGCAGCA TCTACGCCGG CATTGGCGGC
TTGCTCCTCG TCCTCATTTT CATGGTGGCC TACTACCAGC TACCGGGCTT GATTGCCGAT
ATCTCTTTGG CGATCTACGC TCTGCTATCG CTGGCGGCCT TTGATCTGCT GGGCGTGACC
TTAACCCTAC CGGGCATTGC GGGTTTCCTG CTAAGCATCG GCATGGCCGT GGACGCCAAC
GTCTTAATCT TTGAGCGGAC TCGCGAGGAG TTGCGGGCCG GTAAGTCGCT CTATCGCTCT
GTGGAATCCG GCTTCTATCG AGCCTTTAGC AGCATCTTGG ACAGTAATGT CACGACGCTG
ATCGCCTGTG GTGCACTGTT TTGGCTGAGC AGCGGCTTGG TCAAGGGCTT TGCACTGACA
CTAGCGATCG GGGTGATGGT CAGCATGTTC ACGGCGATTA CCTGTAGCCG GACGCTGATG
TTCCTAGCGA TCGCCTATCC AGCCCTGCGC AAGCCGCAAC TGTTCGACCG CCGTCTGTCT
GCAACCAAAT CCTGA
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| Protein sequence | MGKQQSPLIL ILALVAAAIF VLVQLPIRLG LDLQGGSQLT ILVKPTTEIP SVGDRELEAV
QRVIENRVNG LGVSEAVIQT AGSDKILVQL PGVSNPEQAE RVLGGTAQLE FREQNPGTEA
QVTPLQQLVS QARGALEIER RNGDPTKVAE LEQTLERSQV ELAKFFGPAQ ITGKSLKDAL
AQPTQTGNTW EVALRFDTEG GDQFAALTKN LAGTGRSIGI FLDGVLISAP VVGPEFAQTG
ITGGSAVITG RFTTEQAEDL AIQLRGGALP LPVEIVENRT VGATLGRDSI QRSIYAGIGG
LLLVLIFMVA YYQLPGLIAD ISLAIYALLS LAAFDLLGVT LTLPGIAGFL LSIGMAVDAN
VLIFERTREE LRAGKSLYRS VESGFYRAFS SILDSNVTTL IACGALFWLS SGLVKGFALT
LAIGVMVSMF TAITCSRTLM FLAIAYPALR KPQLFDRRLS ATKS
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