| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1832 |
|---|
| Symbol | |
|---|
| ID | 3742929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | - |
|---|
| Start bp | 1757153 |
|---|
| End bp | 1757806 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637772024 |
|---|
| Product | tRNA-(MS(2)IO(6)A)-hydroxylase-like |
|---|
| Protein accession | YP_377833 |
|---|
| Protein GI | 78185398 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4445] Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.26126 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTTT CATTTCCGCA GAAGGCCACT CCGGAGAAGT CCACAGCTTC GATTCGTTGG
CTTGCGGCAC CCACGAGTTG GACTTGGGTT GAACAGGCCA ATGCGCGGCC GATGGCGGTG
TTGATCGACC ATGCCCATTG CGAGCGGAAA GCTGCAGGAT CTGCTGTGCA GATGATGTTC
CGATACCTGT GTGAGCCAGG ACTTGGGGAG GCGCTGAGCC CTTTGGCGCG GGAGGAGCTG
GAGCATTTTG AGCAGGTTCT TGCCTTGATC AAGTCGCGCG GCCGCTATCT CGAGCCACTT
CCTTCGCCTG GATATGCCGC CAACTTGGCG CGTCATATCC GTAAGGGTGA GCCCCAGCGG
ATGCTGGACT CCTTTCTTGT GGCTGGCTTA ATCGAAGCGC GGAGCCATGA ACGGATGGCT
CTCTTGGCCG AGCACAGCCC AGATCCTGAA TTGCGCTCGC TCTATGGCGA TCTCTTGGCA
AGCGAAGCAC GACATTTTGG TTTGTATTGG GTTTTGGTGG AGGAGAGATT TACGAGAGCT
GTGTTGGTGG AACGCTTGCA AACCTTGGCC CTTGCTGAAG TGGAGGCTTT GCAAGGTGTC
CTTGAGTCTC CAGACGATGT GCGGATGCAC TCTTGTGGGG TGTCTCCCAT CTGA
|
|---|
| Protein sequence | MTVSFPQKAT PEKSTASIRW LAAPTSWTWV EQANARPMAV LIDHAHCERK AAGSAVQMMF
RYLCEPGLGE ALSPLAREEL EHFEQVLALI KSRGRYLEPL PSPGYAANLA RHIRKGEPQR
MLDSFLVAGL IEARSHERMA LLAEHSPDPE LRSLYGDLLA SEARHFGLYW VLVEERFTRA
VLVERLQTLA LAEVEALQGV LESPDDVRMH SCGVSPI
|
|---|
| |