Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Syncc9902_1279 |
Symbol | secD |
ID | 3743298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus sp. CC9902 |
Kingdom | Bacteria |
Replicon accession | NC_007513 |
Strand | - |
Start bp | 1239263 |
End bp | 1240750 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637771459 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_377287 |
Protein GI | 78184852 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.221382 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCGTT ATCAGGGTTG GTTTGCGTTT GTTCTTGCCT TGGCCATTGC GGCTGGGATG TTCTTGCTTC GGACCCCGTT GGAATTGGGT CTTGATTTAC GCGGGGGCAG TCAGCTCACC GTGCAGGTGC AGCCGGCAGG GGACATTACC CGTGTGGGTT CCGAGGAAAT GGAGGCGGTG AAAGCCGTGC TCGAGCGCCG TGTCAATGGT CTTGGTGTGG CCGAGTCGAC TCTTCAAACC GTGGGTGATA CCCAGTTGGT GCTTCAGCTC CCAGGCGAGC AAGATCCAAC GCGAGCTGCA CGGGTGCTTG GCAGTACGGC GATGTTGGAG TTCCGTGCAC AAAAGCCTGG TGCGGAGGGA GATCTCAGAA GTTTGCGTCA GTTGCGATCC CAAGTCCGGG CCATTTTGCG GTTGCGCGAA GACCAAGCTC GCAATGGCGA TCCAGACAAC AGCGACGGGA TCGATTTCGA CCAGTTAGCG GAGGCGCAGA AGCTCTTTGG TCTCGATGGT GAGTCCACCA GCGAAATCGA TCAGTTGCAA CAGCTGCTTG AGAAAGTGAA TGGGGAAATC GTTCAACAGT TCGAGCCCGC TGCTCTAACA GGTAAGGATT TGGTTACGGC AGGCCGTCAG CCGTTGCAAA ACAATCCCAA CAGTTGGGAG GTCACCCTGT CGTTCAACAG CGATGGGGCT GAGGCGTTTG CTGAGCTCAC GAAATCCATT GCAGGCACCG ACAGGCTTCT CGGCATCGTT CTTGATGGTC AGGCGATCAG TGAAGCCAGT GTTGGCCCAC AATTCCAAGC CGCTGGCATC TCCGGTGGTT CGGCCAGCAT CAGTGGAAAC TTCACCGCTG AAGAAGCTCG AGAGTTGGAG GTACAGCTCC GCGGTGGATC GCTTCCCCTG CCCGTAGAAA TCATTGAAGT TCGCACCATT GGTCCAACCC TTGGTGCCGA AAACATCCGT CGAAGCTTGG TGGCCGCCTT GTCTGGGCTG GCTTTTGTGG CGGTCTTTAT GGTCGTGGCC TACAGGCTCC CTGGGGCTGT GGCGGTTGTT GCTTTGAGCT TGTACGCCCT CTTCAACTTG GCCATGTACG CCTTAATTCC TGTGACCCTC ACGCTCCCTG GGATTGCAGG TTTCATTCTC AGTATTGGCA TGGCGGTGGA TGCCAACGTG TTGATCTTTG AGCGGATTAA AGATGAATTG CGGCGTGGCA ACACGCTGAT TCGTTCGATC GATACAGGCT TTTCTGAGGC GTTTTCATCC ATTGTTGATG GCCATCTCAC CACGCTGATC AGCTGCGCAG CCTTGTTCTT CCTCGGTACG GGCTTAGTGA AGGGTTTCGC TGCAACGTTG GGGATTGGCG TTTTGCTCAG CCTATTTACG GCACTCACGT GTACCCGCAC GTTGTTGCGA TTCCTGATGG GTTATTCGGG CCTTCGTTCT CCGAATAATT TCTTGCCCAA CAGTCAGCTC CCTACCCCCT CCGCCTGA
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Protein sequence | MARYQGWFAF VLALAIAAGM FLLRTPLELG LDLRGGSQLT VQVQPAGDIT RVGSEEMEAV KAVLERRVNG LGVAESTLQT VGDTQLVLQL PGEQDPTRAA RVLGSTAMLE FRAQKPGAEG DLRSLRQLRS QVRAILRLRE DQARNGDPDN SDGIDFDQLA EAQKLFGLDG ESTSEIDQLQ QLLEKVNGEI VQQFEPAALT GKDLVTAGRQ PLQNNPNSWE VTLSFNSDGA EAFAELTKSI AGTDRLLGIV LDGQAISEAS VGPQFQAAGI SGGSASISGN FTAEEARELE VQLRGGSLPL PVEIIEVRTI GPTLGAENIR RSLVAALSGL AFVAVFMVVA YRLPGAVAVV ALSLYALFNL AMYALIPVTL TLPGIAGFIL SIGMAVDANV LIFERIKDEL RRGNTLIRSI DTGFSEAFSS IVDGHLTTLI SCAALFFLGT GLVKGFAATL GIGVLLSLFT ALTCTRTLLR FLMGYSGLRS PNNFLPNSQL PTPSA
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