Gene Syncc9902_1279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSyncc9902_1279 
SymbolsecD 
ID3743298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus sp. CC9902 
KingdomBacteria 
Replicon accessionNC_007513 
Strand
Start bp1239263 
End bp1240750 
Gene Length1488 bp 
Protein Length495 aa 
Translation table11 
GC content56% 
IMG OID637771459 
Productpreprotein translocase subunit SecD 
Protein accessionYP_377287 
Protein GI78184852 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.221382 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCGTT ATCAGGGTTG GTTTGCGTTT GTTCTTGCCT TGGCCATTGC GGCTGGGATG 
TTCTTGCTTC GGACCCCGTT GGAATTGGGT CTTGATTTAC GCGGGGGCAG TCAGCTCACC
GTGCAGGTGC AGCCGGCAGG GGACATTACC CGTGTGGGTT CCGAGGAAAT GGAGGCGGTG
AAAGCCGTGC TCGAGCGCCG TGTCAATGGT CTTGGTGTGG CCGAGTCGAC TCTTCAAACC
GTGGGTGATA CCCAGTTGGT GCTTCAGCTC CCAGGCGAGC AAGATCCAAC GCGAGCTGCA
CGGGTGCTTG GCAGTACGGC GATGTTGGAG TTCCGTGCAC AAAAGCCTGG TGCGGAGGGA
GATCTCAGAA GTTTGCGTCA GTTGCGATCC CAAGTCCGGG CCATTTTGCG GTTGCGCGAA
GACCAAGCTC GCAATGGCGA TCCAGACAAC AGCGACGGGA TCGATTTCGA CCAGTTAGCG
GAGGCGCAGA AGCTCTTTGG TCTCGATGGT GAGTCCACCA GCGAAATCGA TCAGTTGCAA
CAGCTGCTTG AGAAAGTGAA TGGGGAAATC GTTCAACAGT TCGAGCCCGC TGCTCTAACA
GGTAAGGATT TGGTTACGGC AGGCCGTCAG CCGTTGCAAA ACAATCCCAA CAGTTGGGAG
GTCACCCTGT CGTTCAACAG CGATGGGGCT GAGGCGTTTG CTGAGCTCAC GAAATCCATT
GCAGGCACCG ACAGGCTTCT CGGCATCGTT CTTGATGGTC AGGCGATCAG TGAAGCCAGT
GTTGGCCCAC AATTCCAAGC CGCTGGCATC TCCGGTGGTT CGGCCAGCAT CAGTGGAAAC
TTCACCGCTG AAGAAGCTCG AGAGTTGGAG GTACAGCTCC GCGGTGGATC GCTTCCCCTG
CCCGTAGAAA TCATTGAAGT TCGCACCATT GGTCCAACCC TTGGTGCCGA AAACATCCGT
CGAAGCTTGG TGGCCGCCTT GTCTGGGCTG GCTTTTGTGG CGGTCTTTAT GGTCGTGGCC
TACAGGCTCC CTGGGGCTGT GGCGGTTGTT GCTTTGAGCT TGTACGCCCT CTTCAACTTG
GCCATGTACG CCTTAATTCC TGTGACCCTC ACGCTCCCTG GGATTGCAGG TTTCATTCTC
AGTATTGGCA TGGCGGTGGA TGCCAACGTG TTGATCTTTG AGCGGATTAA AGATGAATTG
CGGCGTGGCA ACACGCTGAT TCGTTCGATC GATACAGGCT TTTCTGAGGC GTTTTCATCC
ATTGTTGATG GCCATCTCAC CACGCTGATC AGCTGCGCAG CCTTGTTCTT CCTCGGTACG
GGCTTAGTGA AGGGTTTCGC TGCAACGTTG GGGATTGGCG TTTTGCTCAG CCTATTTACG
GCACTCACGT GTACCCGCAC GTTGTTGCGA TTCCTGATGG GTTATTCGGG CCTTCGTTCT
CCGAATAATT TCTTGCCCAA CAGTCAGCTC CCTACCCCCT CCGCCTGA
 
Protein sequence
MARYQGWFAF VLALAIAAGM FLLRTPLELG LDLRGGSQLT VQVQPAGDIT RVGSEEMEAV 
KAVLERRVNG LGVAESTLQT VGDTQLVLQL PGEQDPTRAA RVLGSTAMLE FRAQKPGAEG
DLRSLRQLRS QVRAILRLRE DQARNGDPDN SDGIDFDQLA EAQKLFGLDG ESTSEIDQLQ
QLLEKVNGEI VQQFEPAALT GKDLVTAGRQ PLQNNPNSWE VTLSFNSDGA EAFAELTKSI
AGTDRLLGIV LDGQAISEAS VGPQFQAAGI SGGSASISGN FTAEEARELE VQLRGGSLPL
PVEIIEVRTI GPTLGAENIR RSLVAALSGL AFVAVFMVVA YRLPGAVAVV ALSLYALFNL
AMYALIPVTL TLPGIAGFIL SIGMAVDANV LIFERIKDEL RRGNTLIRSI DTGFSEAFSS
IVDGHLTTLI SCAALFFLGT GLVKGFAATL GIGVLLSLFT ALTCTRTLLR FLMGYSGLRS
PNNFLPNSQL PTPSA