| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1148 |
|---|
| Symbol | |
|---|
| ID | 3742798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | + |
|---|
| Start bp | 1114454 |
|---|
| End bp | 1115530 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637771328 |
|---|
| Product | peptidoglycan-binding LysM |
|---|
| Protein accession | YP_377156 |
|---|
| Protein GI | 78184721 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.766808 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGCAC TGCTCCTATT GGCAAGTGCA ACTACTCCTT TCTTGGCCCT CTCGGTTTGG
AGTGGCTTAC CTGGGCATGC AGATAACAAT GTTTTCAACT TGGCGGAGCT CCCTCCCCTC
CCTGTAGAAG TTTCACAACG TCAGACACCT CTATCTGCAA CGGAGTTTTC TTCGTCTTCA
GACGAGTCAG CATCATCAGC CCCCTCCCTC TGGTTCCAGC TCACCCGATC GATTTCGCTC
ACTCAGCTTG CAAAGGCTCT TGATCTACCC CCAGATCAAC TAGCTGAGCT GAATGGTCGC
TCTACCACCC ATCGTTTTTC AACTAAAAGT TGGGCTGTCG TTCCTGCGTC TCTAGGTGAT
CGAGCTGAAT TGATCATTGG TCTTGATAAG AGGTCGCGTC GCGATTCGGC TCCACTTTCA
TCTCCCCCGC CCGTATCTGA AGTTGCTGCT GTTCAAAAAG GAGATTCCCT GGCTTCGTTT
TTGGCCCGCA ATGGCGTTTC TCGCGCTGAA CTAAAAACCT TTAACCCCGG TTTACAGCTC
AACGAATTAA CAGTTGGCCG CGAATTGCGA GTAGCCCAAG CTTCACCGGG TCAATCGATG
CTTGCTATTC GTCCAACATT GAGTGGTGGT GCTGCTTGGC CCATGCGACC TTCCTTCAAC
CCTGGACGCA CCCCAGCAGA ACGCCTGAAA TTTGGTCGAG ATTATCTATG GCCAACAAAG
GGGGTTTTCA CCTCCGGCTT TGGCTGGCGT TGGGGGCGCA TGCACAAGGG TATTGATATT
GCCAACAACA CTGGAACGCC GATTTTCGCT TCCCGTGATG GCGTAGTGGC TTTTGCAGGG
TGGAGTGGTG CCTATGGCTA TTTGGTTGAG ATTGCCCATG CGGATGGTGA CTCAACCCGC
TATGCCCACA ACAGCCGCAT CTTGGTCAGA AAAGGTCAGA TCATTCCCCA GGGTTCCCGG
ATATCTTTGA TGGGGAGTAC AGGACGAAGT ACAGGTCCCC ATCTCCACTT CGAAATACGC
CGCGCAGGTG GTGCAGCACT CAATCCTTTG AGCAAACTTC CCGCACGTAA GGCATGA
|
|---|
| Protein sequence | MRALLLLASA TTPFLALSVW SGLPGHADNN VFNLAELPPL PVEVSQRQTP LSATEFSSSS
DESASSAPSL WFQLTRSISL TQLAKALDLP PDQLAELNGR STTHRFSTKS WAVVPASLGD
RAELIIGLDK RSRRDSAPLS SPPPVSEVAA VQKGDSLASF LARNGVSRAE LKTFNPGLQL
NELTVGRELR VAQASPGQSM LAIRPTLSGG AAWPMRPSFN PGRTPAERLK FGRDYLWPTK
GVFTSGFGWR WGRMHKGIDI ANNTGTPIFA SRDGVVAFAG WSGAYGYLVE IAHADGDSTR
YAHNSRILVR KGQIIPQGSR ISLMGSTGRS TGPHLHFEIR RAGGAALNPL SKLPARKA
|
|---|
| |