| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_0139 |
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| Symbol | |
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| ID | 3744014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | + |
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| Start bp | 147667 |
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| End bp | 148665 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637770306 |
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| Product | type II alternative sigma-70 family RNA polymerase sigma factor |
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| Protein accession | YP_376157 |
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| Protein GI | 78183723 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACCCG TCGCTACCGC TGCTTCAAAA CCAGCGACCT CTACCCGTTC CGTCAGTGTT
GACGTCGATT TGGTGCGTTC TTATCTCCGG GATATTGGAC GGGTGCCATT GCTCACCCAT
GAGCAAGAAA TCACCTTGGG CCGCCAGGTC CAGCAGCTGA TGGAGATCGA AACTCTCGAA
GCTGAGCTGG AAAGCAGAGA TGGAGCCAAG CCCGCTCGCG ATCAACTAGC CAAGGCTGCC
GAGCTTTCCA CGGTCCAGCT CAAGCGCAAG TTGCAGCAGG GTCATCGCGC TAAGGAGCGG
ATGGTGGCCG CCAATCTTCG CCTCGTTGTG AGCGTTGCTA AGAAATACAC CAAGCGAAAC
ATGGAGCTCC TGGATCTGAT CCAGGAAGGA ACGATTGGTT TGGTTCGTGG AGTCGAAAAG
TTCGACCCCA CCCGTGGTTA CAAATTCTCT ACTTACGCCT ACTGGTGGAT TCGTCAGGGC
ATTACTCGTG CCATTGCTGA GAAGAGCCGC ACAATTCGCC TGCCAATTCA CATCACCGAG
ATGCTGAATA AGCTGAAAAA AGGCCAGCGA GAGCTCAGCC AAGAGCTAGG TCGCACTCCT
ACCGTCACCG AATTAGCTCA ATTCGTTGAT TTGCCCGAAG ACGAAGTGAA AGATCTGATG
TGCCGTGCTC GCCAGCCAGT GAGCCTTGAG ATGAAGGTGG GTGATGGAGA CGACACTGAA
TTGTTGGAGC TTCTTTCCGG AGATAATGAG CTTCCCAGTG ATCAAGTCGA AGAAGATTGC
CTGAAGGGTG ATTTGCGCAG CTTGTTGGGC CAGCTTCCCC ACCTGCAAGA ACAAGTGCTC
CGCATGCGTT TCGGCATGGA TGGAGAAGAT CCGATGAGCC TCACAGGGAT TGGTCGCATT
TTGGGGATGA GCCGCGACCG AGTTCGCAAT TTGGAGCGTG ATGGCTTGGC TGGATTGCGT
CGCGTTAGCG ATCAGGTTGA GGCTTACGTT GCCTGCTGA
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| Protein sequence | MAPVATAASK PATSTRSVSV DVDLVRSYLR DIGRVPLLTH EQEITLGRQV QQLMEIETLE
AELESRDGAK PARDQLAKAA ELSTVQLKRK LQQGHRAKER MVAANLRLVV SVAKKYTKRN
MELLDLIQEG TIGLVRGVEK FDPTRGYKFS TYAYWWIRQG ITRAIAEKSR TIRLPIHITE
MLNKLKKGQR ELSQELGRTP TVTELAQFVD LPEDEVKDLM CRARQPVSLE MKVGDGDDTE
LLELLSGDNE LPSDQVEEDC LKGDLRSLLG QLPHLQEQVL RMRFGMDGED PMSLTGIGRI
LGMSRDRVRN LERDGLAGLR RVSDQVEAYV AC
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