Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Syncc9902_0100 |
Symbol | |
ID | 3744053 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus sp. CC9902 |
Kingdom | Bacteria |
Replicon accession | NC_007513 |
Strand | - |
Start bp | 99650 |
End bp | 101056 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 637770266 |
Product | HAD family hydrolase |
Protein accession | YP_376118 |
Protein GI | 78183684 |
COG category | [M] Cell wall/membrane/envelope biogenesis [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases [COG1083] CMP-N-acetylneuraminic acid synthetase |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0368988 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATCATGA TTTCACACCA ATATAAAAAT ACTGACAAAG AAATAATGTA CAAGAAAATC TCAGCGATTG TCCCGATTAA GTTTAATTCG AGAAGACTTC CGAACAAAAA TTTCCTGAAT CTTAATGGAA GGCCACTATG CTCATATATA TTTCAAACAT TAACACAAGT CGAAGGAATT CATAACATTT ATTGTTATGC AAGTTCAAGT CTCCCACTAA ATTTTTTACC AAAATCAGTC AAGTACCTTC AGAGACCTTC GTACCTAGAT GGGGATAATA TAGAGGCAAC TGAACTATTT AGATACGCAA TAGAATCAAT AGATACGGAT ATTGTGATAA TTACACATGC TACATCGCCA TTGATACATT CAGAATCAAT AGAAAGAGGA TTACAAGCAG TAATCTCAGG GGAATATAGA TCGGCATATA GTGTACATAA AATACAAAAG TATTCGTGGT GTGATGGAAA ACCAGTCAAT TTTACACCTT CTAAGCTTGA ACAAACTCAA AAAATATCAC CAGTATTGTA TGAAACATCA GGATTTTATG TTTTTAGGAA AAGAGATTTT TTGGAAAGTA ATACAAGGAC TACTGAACCT GCATTCAAAG TAGAGATACC CATATCAGAA GCAGTAGATA TTGACAATCC TGAAGACTTT GAGCTAGCGA CAAAGTTGCA ATATGATAAT AATATAACAG AAAATGAGCT GACTTCGAAA TACTTTGTTG ATCTAATCAA AAGAATAAGT CCAGAATCAA ATTTGAAAGA AAGCATTAGT CATATATGCT TTGATTTAGA TGGTGTTTTG ATAGATTCAA AGATTGTGAT GAAGATAGCA TGGGAGGAGT GTATGAGAAT ATTTGAATTG GAACAAACAT TCGAAGAATA TTTCACACAT TTAGGAATCG AATTTTTTGA AATTTTGAAA AAAATTGAAA TTAAAAAAAA TTTGCATGAT GATATCTATA AACTTTATAA TGAGGTATCT CTAAATAATT CATATAAAAT TAAAGTCTAT AATAACACAA GAGAGGTATT AAAAAGATTA AAAAATGCAG GCTTCGGATT AAGTATATGT ACATCCAAAT CACGAAAACG TACTATTGAG GTACTTAGAA GGAATAACTT GATTCAGTAT TTTGACTATA TTTCTGCAAC AGAAAAAGAA AATAAACTTA GACCAAAACC AGCACCAGAC TTTCTATTAG AGTGTTGTAC TAACTTAAAA GTAGACCCAT CGCAGACAAT CTATATAGGT GACACAGATT ACGATCATGA ATGCGCTAAG AGAGCACATA CTGCATTTAT ACATGCAGAA TGGGGATATG GGAGAGACAA TATTAGGGAA AAGTCAATAT GGTTAGAGTC CATTAAAGAC CTTGACACCC TCTTGATCGA TGAGTAA
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Protein sequence | MIMISHQYKN TDKEIMYKKI SAIVPIKFNS RRLPNKNFLN LNGRPLCSYI FQTLTQVEGI HNIYCYASSS LPLNFLPKSV KYLQRPSYLD GDNIEATELF RYAIESIDTD IVIITHATSP LIHSESIERG LQAVISGEYR SAYSVHKIQK YSWCDGKPVN FTPSKLEQTQ KISPVLYETS GFYVFRKRDF LESNTRTTEP AFKVEIPISE AVDIDNPEDF ELATKLQYDN NITENELTSK YFVDLIKRIS PESNLKESIS HICFDLDGVL IDSKIVMKIA WEECMRIFEL EQTFEEYFTH LGIEFFEILK KIEIKKNLHD DIYKLYNEVS LNNSYKIKVY NNTREVLKRL KNAGFGLSIC TSKSRKRTIE VLRRNNLIQY FDYISATEKE NKLRPKPAPD FLLECCTNLK VDPSQTIYIG DTDYDHECAK RAHTAFIHAE WGYGRDNIRE KSIWLESIKD LDTLLIDE
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