Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Syncc9605_2596 |
Symbol | |
ID | 3735306 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus sp. CC9605 |
Kingdom | Bacteria |
Replicon accession | NC_007516 |
Strand | + |
Start bp | 2407948 |
End bp | 2409081 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637777183 |
Product | type II alternative RNA polymerase sigma factor |
Protein accession | YP_382879 |
Protein GI | 78214100 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.297655 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCCCAGCA AGCCCCGAAG GACCGGGGGG ACCCGTGAGC GCCGCAGCAG CGGCACCACG GATCTGCTGC GGCTTTATCT CCAGGACATC GGCCGGGTCG ACCTGCTCAC CAATGAGGAG GAGGTCACCC TGGCCCGTTT GGTGCAGCGC CGCGAAGCAC TGCTCAGCCA GCAACAGAAG CTGGCTGAAA GCGATGCCGC TATCGGTGAA CTGCACCGTC TCGAAGAACT GCAACGCCGG GAAGCCAACC AGCACAGCCA CTGGCCAACC AAGCAGGAAT GGGCCCGCGC GGCCGATCTG CCCTTGCCCG AGTTGCAGCA GCGAATTGAC CGGGGCTATC AGGCCTGGGC GGAACAGGCC CAGCTGGAAG CCAAAGATCT GAAACTTGCC CTCCGCAACG GACGGCGAGC CAAAGACCAC ATGATTCAGG CCAACCTGCG CCTGGTGGTG GCGGTGGCCA AGAAGTACCA ACAGCGGGGC ATGGAAATCC TGGACCTGGT CCAGGAGGGA ACGCTCGGGC TGGAACGGGC CGTGGAGAAG TTCGACCCCA CCCGTGGTTT CCGCTTCAGC ACCTACGCCT ACTGGTGGAT TCGTCAGGGC ATCACCAGGG CCATCGCCAC CCAGAGCCGC ACGATCCGTT TGCCCGTTCA CGTCACCGAA AAACTGAACC GGATCAAACG GGTCCAGCAG GAGATTGCGA GCAACGAAGG GCGCATTGCC TCGATTGCGG ATCTGGCTCG CGAATTGGGC ATCAGTGAAG ACACCGTGCG CCAGACCCTG GCCCGGGTGC CCCGTTCGGT GTCTCTGGAC ACCCGTGTCG GCCGCGAACA GGACACCCAG CTCGGAGATC TGATCGAGGA CGGCCACGCC ACCCCCGAGC AGACCCTCAC CCACGACGAA CTCCACAACG ACCTGGAGCA TCTCCTGGAT GAACTCACCA GTCGGGAAGC CGCTGTCCTG CGCCGGCGCT TCGGCTTGGA GGACGACACG CCCCAGACCC TGGCCCAGAT CGGGGAAGAA CTGAAACTCT CAAGGGAGCG CGTCCGTCAG ATCGAAACCC GCGCCCTGCT CAAGCTGCGG CAACCCCAAC GACGCAGCAA AATCCGGGAT TACATCCAGA GCCTTGATTC CTGA
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Protein sequence | MPSKPRRTGG TRERRSSGTT DLLRLYLQDI GRVDLLTNEE EVTLARLVQR REALLSQQQK LAESDAAIGE LHRLEELQRR EANQHSHWPT KQEWARAADL PLPELQQRID RGYQAWAEQA QLEAKDLKLA LRNGRRAKDH MIQANLRLVV AVAKKYQQRG MEILDLVQEG TLGLERAVEK FDPTRGFRFS TYAYWWIRQG ITRAIATQSR TIRLPVHVTE KLNRIKRVQQ EIASNEGRIA SIADLARELG ISEDTVRQTL ARVPRSVSLD TRVGREQDTQ LGDLIEDGHA TPEQTLTHDE LHNDLEHLLD ELTSREAAVL RRRFGLEDDT PQTLAQIGEE LKLSRERVRQ IETRALLKLR QPQRRSKIRD YIQSLDS
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