Gene Syncc9605_2067 details

Gene Information

• Locus tag: Syncc9605_2067
• Symbol: rpoB
• ID: 3735718
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Synechococcus sp. CC9605
• Kingdom: Bacteria
• Replicon accession: NC_007516
• Strand: -
• Start bp: 1888567
• End bp: 1891860
• Gene Length: 3294 bp
• Protein Length: 1097 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637776653
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_382362
• Protein GI: 78213583
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.883429
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 12
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGCAGCA GCGCGATTCA GGTCGCCAAG ACCGCCACCT ACCTCCCTGA TCTGGTGGAG 
GTGCAGCGGG CCAGCTTTAA GTGGTTTTTG GATCAAGGTC TGATCGAGGA GCTGGAAAGC 
TTCTCTCCGA TCACGGATTA CACCGGCAAG CTGGAGCTGC ATTTCATTGG TAGTGAGTAC 
CGCCTGAAGC GCCCCCGCCA CGATGTGGAA GAGGCCAAGC GACGTGATGC GACCTTCGCG 
TCACAGATGT ACGTGACCTG CCGCCTGGTC AACAAGGAGA CCGGTGAGAT CAAGGAGCAG 
GAGGTCTTCA TCGGCGAACT GCCGCTGATG ACCGAGCGCG GCACGTTCAT CATCAACGGC 
GCTGAGCGCG TGATCGTGAA CCAGATCGTG CGCAGCCCTG GTGTCTATTT CAAGGATGAA 
ATGGACAAGA ACGGTCGGCG CACTTACAAC GCCAGCGTCA TCCCCAACCG GGGTGCCTGG 
CTGAAGTTTG AGACCGATAA GAACGACTTG CTCCACGTTC GTGTGGACAA GACCCGCAAG 
ATCAACGCGC ACGTGCTCAT GCGTGCCATG GGTCTCTCCG ACAACGACGT GCTCGACAAG 
CTGCGTCACC CCGAGTTCTA CAAGAAGTCG ATTGATGCCG CAAACGATGA GGGCATCAGT 
TCGGAAGACC AGGCGCTGCT TGAGCTCTAC AAGAAACTGC GCCCAGGTGA ACCCCCCTCA 
GTGAGTGGTG GTCAGCAGCT GCTGCAGACC CGTTTCTTCG ATCCCAAGCG CTACGACCTC 
GGTCGGGTCG GCCGCTACAA AATCAACAAG AAGCTGCGCC TCACCATCCC CGACACGGTG 
CGCACCCTCA CCCATGAGGA CGTGCTCTCG ACCCTCGATT ACCTGATCAA CCTGGAACTG 
GATGTCGGTG GTGCCAGCCT CGACGACATC GACCACCTCG GTAACCGCCG CGTGCGTTCC 
GTGGGCGAAC TCCTGCAGAA CCAAGTTCGG GTGGGTTTGA ACCGTCTTGA GCGGATCATC 
AAGGAACGGA TGACCGTCGG CGAAACCGAT TCGCTGACCC CGGCCCAGTT GGTGAACCCC 
AAGCCCCTGG TGGCGGCGAT CAAGGAGTTC TTCGGCTCCA GTCAGCTGAG CCAGTTCATG 
GACCAGACCA ACCCTCTGGC TGAGCTCACC CACAAACGCC GTATCTCGGC CCTTGGACCC 
GGCGGTCTCA CCCGTGAGCG TGCCGGCTTC GCCGTCCGCG ACATTCACCC CTCCCACTAC 
GGCCGTCTCT GCCCGATTGA GACGCCAGAA GGTCCCAACG CCGGTCTGAT CAACTCCCTG 
GCCACCCACG CCCGGGTCAA CGAGTACGGC TTCATCGAAA CGCCGTTCTG GAAGGTTGAG 
TACGGTGTCG TTCTCAAGGA CGGCGATCCG ATCTACCTGT CTGCCGACCG GGAAGACGAA 
GTGCGCGTCG CCCCTGGTGA CGTGGCCACC GAGGACGACG GCCGGATCTC GGCGGATCTG 
ATTCCTGTGC GTTATCGCCA GGACTTCGAG AAGGTCCCCC CTGAGCAGGT CGACTACGTC 
GCCCTGTCAC CAGTACAGGT GATCTCCGTG GCAACGTCCC TGATTCCTTT CCTGGAGCAC 
GACGACGCCA ACCGCGCCCT GATGGGCTCC AACATGCAGC GTCAGGCTGT GCCGTTGCTT 
CGCCCTGAGC GTGCCCTGGT GGGCACCGGC CTGGAAACCC AGGTGGCCCG CGACTCCGGC 
ATGGTGCCGA TCTCCCGGGT GAATGGCACC GTCACCTATG TGGATGCCAA CGCCATCGTT 
GTTCAGGACG AGGACGGCAA CGACCACACC CACTTCCTGC AGAAGTATCA GCGCTCCAAC 
CAGGACACCT GTCTGAACCA GCGCCCAATC GTCCGCTGTG GCGATCCGGT GATCGTAGGT 
CAGGTGATGG CGGATGGCTC GGCCTGTGAA GGCGGTGAGA TCGCCCTGGG TCAGAACGTT 
CTGATCGCTT ACATGCCCTG GGAGGGTTAC AACTACGAGG ACGCGCTGCT GGTGAGCGAG 
CGTCTGGTCA CCGACGACCT CTACACCTCG GTTCACATCG AGAAGTACGA GATCGAAGCG 
CGTCAGACCA AGCTGGGACC TGAGGAGATC ACCCGTGAGA TCCCCAACGT CGCTGAGGAA 
AGCCTTGGCA ACCTCGACGA GATGGGCATC ATCCGCGTGG GCGCTTTCGT TGAAAGCGGC 
GACATCCTCG TCGGCAAGGT GACGCCCAAG GGTGAATCCG ACCAGCCGCC GGAAGAGAAG 
CTGCTGCGCG CGATCTTCGG TGAGAAGGCC CGTGATGTGC GCGACAACTC CCTGCGGGTG 
CCCGGCACCG AGCGTGGCCG CGTTGTGGAT GTGCGCATCT ACACCCGTGA ACAGGGTGAT 
GAGCTGCCCC CCGGCGCCAA CATGGTGGTG CGGGTTTATG TGGCCCAGCG CCGCAAGATC 
CAGGTCGGCG ACAAGATGGC TGGCCGCCAC GGCAACAAGG GCATCATCAG CCGCATCCTT 
CCCCGAGAGG ACATGCCCTA TCTGCCCGAC GGCACCCCGG TCGACATCGT GCTCAACCCC 
CTGGGTGTGC CGAGCCGGAT GAATGTGGGT CAGGTGTTCG AGCTGCTGAT GGGTTGGGCA 
GCGTCCAACC TCGATTGCCG CGTGCGCATC GTTCCCTTCG ATGAGATGCA CGGTGCTGAG 
AAGTCCCAGC AAACCGTCGA GACCTTCCTC AAGGAAGCCG CCAAGCAGCC CGGTAAGGGT 
TGGGTTTACG ACCCAGAGGA TCCAGGCAAG CTGCAGCTGC GGGATGGCCG CACCGGCCTG 
CCCTTCGACC AGCCCGTGGC CGTGGGTTAC TCCCACTTCC TCAAGCTGGT TCACCTGGTG 
GACGACAAGA TTCACGCACG CTCCACCGGC CCCTACTCCC TGGTCACCCA GCAGCCCCTG 
GGCGGTAAGG CACAGCAAGG TGGTCAGCGT CTGGGTGAGA TGGAGGTGTG GGCCCTCGAG 
GCCTATGGCG CCGCATACAC CCTGCAGGAA CTGCTTACGG TCAAGTCCGA CGACATGCAG 
GGCCGCAACG AGGCCCTCAA CGCCATCGTC AAGGGCAAGC CGATCCCCCG CCCAGGTACT 
CCGGAATCCT TCAAGGTGCT GATGCGCGAG CTTCAGTCCC TGGGGCTGGA CATCGCCGTC 
TACACCGACG AAGGCAAGGA AGTGGATCTG ATGCAGGACG TGAACCCACG TCGCAGCACC 
CCCAGCAGGC CCACCTACGA ATCCCTCGGC GTCGCGGATT ACGACGAGGA CTGA 

 

Protein sequence

MSSSAIQVAK TATYLPDLVE VQRASFKWFL DQGLIEELES FSPITDYTGK LELHFIGSEY 
RLKRPRHDVE EAKRRDATFA SQMYVTCRLV NKETGEIKEQ EVFIGELPLM TERGTFIING 
AERVIVNQIV RSPGVYFKDE MDKNGRRTYN ASVIPNRGAW LKFETDKNDL LHVRVDKTRK 
INAHVLMRAM GLSDNDVLDK LRHPEFYKKS IDAANDEGIS SEDQALLELY KKLRPGEPPS 
VSGGQQLLQT RFFDPKRYDL GRVGRYKINK KLRLTIPDTV RTLTHEDVLS TLDYLINLEL 
DVGGASLDDI DHLGNRRVRS VGELLQNQVR VGLNRLERII KERMTVGETD SLTPAQLVNP 
KPLVAAIKEF FGSSQLSQFM DQTNPLAELT HKRRISALGP GGLTRERAGF AVRDIHPSHY 
GRLCPIETPE GPNAGLINSL ATHARVNEYG FIETPFWKVE YGVVLKDGDP IYLSADREDE 
VRVAPGDVAT EDDGRISADL IPVRYRQDFE KVPPEQVDYV ALSPVQVISV ATSLIPFLEH 
DDANRALMGS NMQRQAVPLL RPERALVGTG LETQVARDSG MVPISRVNGT VTYVDANAIV 
VQDEDGNDHT HFLQKYQRSN QDTCLNQRPI VRCGDPVIVG QVMADGSACE GGEIALGQNV 
LIAYMPWEGY NYEDALLVSE RLVTDDLYTS VHIEKYEIEA RQTKLGPEEI TREIPNVAEE 
SLGNLDEMGI IRVGAFVESG DILVGKVTPK GESDQPPEEK LLRAIFGEKA RDVRDNSLRV 
PGTERGRVVD VRIYTREQGD ELPPGANMVV RVYVAQRRKI QVGDKMAGRH GNKGIISRIL 
PREDMPYLPD GTPVDIVLNP LGVPSRMNVG QVFELLMGWA ASNLDCRVRI VPFDEMHGAE 
KSQQTVETFL KEAAKQPGKG WVYDPEDPGK LQLRDGRTGL PFDQPVAVGY SHFLKLVHLV 
DDKIHARSTG PYSLVTQQPL GGKAQQGGQR LGEMEVWALE AYGAAYTLQE LLTVKSDDMQ 
GRNEALNAIV KGKPIPRPGT PESFKVLMRE LQSLGLDIAV YTDEGKEVDL MQDVNPRRST 
PSRPTYESLG VADYDED