Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Syncc9605_2036 |
Symbol | |
ID | 3737712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus sp. CC9605 |
Kingdom | Bacteria |
Replicon accession | NC_007516 |
Strand | + |
Start bp | 1854383 |
End bp | 1857871 |
Gene Length | 3489 bp |
Protein Length | 1162 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637776622 |
Product | lipopolysaccharide biosynthesis protein-like |
Protein accession | YP_382331 |
Protein GI | 78213552 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3754] Lipopolysaccharide biosynthesis protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCGGCA TGCCAAAAAA TCGTCATCCG CTCTCCGCTC TTTCGCACAC GACGAAGCAG GTGCTGAAGC GCTCAGCCTC TGCGATGGGC CGGCAGAAAA TATTGCCCAA GGCACTGCGG AAGCAGTTCA ATCGACTGGG CCAAGCCAAA CATTCAGCGC CACCAAACAA CAGACGCAAA AAAACAACAC CCGAGCTGCA GGATTACATT AAGAACCTTC AAAGCAAAGA TATAAACAAG AAAATTATTC GTGACTTTCG AGAATTAGCC CATTACGCCT ACGTGTTCGA CATTGAGCAG TATAGGGCCC AATTAGAGAG GGAAGAGGCA GAGGGTCTTA AATGCATTGG AGACGTAATC CTTCATTACT GCACATCAGG CAGCAAAAAA GGGATTGATC CCAGCATACT CTTTGATACA GACAATTATT TAAGCAAATA CCCGGATGTC AGAGAAAGTG GACTCAACCC AATGGTTCAC TGTTTCAAAT TCGGAATGAA CGAACACCGT TACTCTATGG ACAACATCCA TTTCATGCGG AAGATGGCTG ACATAAAAAA AACCGTAACA GATGACTTTA ACGCAATCAA AGAAGGTCTA ATCAATAAAA AAGTTGGAAT TTTTCTGCAT ATCTTCTATC CAGAACTTGG CGAAACAATT GCAGCTTACC TCAAAAATAT ACCCTGCAGC ATCGATGTCT TTATTTCCAC AAGGGAAGAC TCGGTCGCAG CCCTAGAGAA AATTTTTGCG CGAGTTGAAA ATACACAAAA GATCGAAGTC AGACACTTCA GCAATATCGG ACGCGACGTC GCTCCATTCA TTGTTGGCTT TAGGGATCAA ATTCTCAATT ACGACTACAT CCTCAAGCTG CATTCCAAAA AGAGTCCTCA CAGCAATGCA CTTAGCGGCT GGTTCCTTCA CTGCCTGGAC AATCTGATTG GCAGCGAAGC CATCACAGCG ACCAACCTTA AAGCCCTTCA ATCGCCAGAA GTAGGCATTG TGTATCCGAT TGAGAACTAT GCTCTGAGCC TCGGAATCCA ACACGACTCC TGCTGGGGCC ACGAGGATGG CAACTACGCC AAAGCCAGAC CCTTCCTCAA TCGCTACAAC CTTCGCCAGA TCAAACGAGA AAGCCAGTTC CAGTTCCCAA CCGGGACGAT GTTTTGGTGC AAGCCAGCGG TCCTGCAATC AATCCTAGAC TGGGGTCTTA ATTGGAACAA CTTTGACGAG GAAGGTGGAC AAATCGACGG GACGATTGCC CACAGCATTG AACGCCTCAT TGGAATTTCA ACAACCGAAA TATACAAGCA AAAAATTCTG ACAACCTATG CTGGATATCT ACTCTCCAAG CAACACATAC ATGACAAATC AATTATCGAA GACCGCAATA AGCTGTGCAT TGATGGCTTC GAAAAAGTCA TTCAATTCAC CCCCCAGAGA CTCGATACGA ACTGGTCACT GAAAAAAAAC ATCAACACCA AATCTCTTCA CATTCATTGG GTCATCCCCA ATTTCACACC TGGCCTTGGC GGCCACATGA CCATTTTCAG AACAATCGAA TATTTGGAAC GTTGTGGCCA CCAATGCACA ATCTGGGTCC ATTCCGAGCT CAAGGGGAAC GACAAGCCAA GCCGCCTTAG CTCGTTGCAC AAACGTGTAA TCAACCAGTC CTTCATTTCC CTGGATACAG ACCAGGTCTA CATGCTGGGC AACAACCAAG ACGACCTTGA TCTTGTATCC GGCGACGTTG TCATTGCCAC AGACCGGATG AGCACTTATC CAGTGCTTGG AATGAAAAAA TTTCAGAAAA GATTTTATTT TGTTCAAGAT TATGAGCCCT ATTTTTTCGC TCGAGGTAGC TCCAGCATCC TTACCGAACA ATCCTATGCA TCTGATAACA ATTTTTTCTG CATTTGTGCC AGCCCTTGGC TGAAACAGAA GATGGAAAGC TTTGGCAACT TAGCCATCTC TTTCCCACTG GCCGTCGACC ACAGTGTTTA CTACCCCAAG AACGAAGAGA AACGCAAACG TGATGCCATT GCCTTCTATG TAAGACGCAG TACGCCAAGG CGACTTTATG AACTGGGACT GCTTGCCTTA AGAGCTTTAT TTGATCTTGG CGACCACTTC GAGATCATCA CCTTCGGCGA AAAAGACCTT CCCGATCTTG GAATTCCAGT GAAAGTGAGG CATGCAGGAA TTCTGGACGC CGACGCCTTG GCCAATCTCT ATCGCCAATG CGCAGTTGGT TTGGTGCTTT CGGGAACCAA CTACTCACTG GTGCCAAACG AAATGATGGC CTGCGGGCTG CCGGTTGTTG ATATTGATGC CGAGCACACG CGGATCTCCT ATCAACCAGA AACGGCGGTG TTGGCCAAAC CAACACCGAT AGAGCTGGCC TCAGCATTAA GCCGATTGTT GAATGATGCA TCGTTCAGGC AAAGCACCGC TAAGGCTGGC CTTGCCGCCA CTGAACAGCT TACCTGGGAT GGCTCCAACA AACTGATCGA AGCCTTCATT CAGGAGTCAC TGTCATCGGC ACAATCGCTC CCGCGACAAC TTCAGTCATC GACTCCCTTG GTGACGATTG TGATCCCCGT TTACAACGGA GGTACGATGC TCAAAACCGT CATTGAGTCT TGTCTGTCGC AAGATCTTGA TCAGGAATTT GAAGTGTTAC TGATCGACAG TGCCTCCAGT GATGGATGCC TCGATGCACT GCCACAAGAC GAACGACTCC ATCTACACAG AATTAAGCAA GAGGATTTTG GTCATGGACG CACCCGCAAC TTGGGAGTAG AGCTAGCGCG AGGGGAATAC GTCGCTTTCA TCACGCAGGA CGCGATTCCT GCAAATCGCA TGTGGCTGAT GAATCTCATC GCTCCACTCC AAAAGGATCC AAATGTGGCC GGTGTTTTCG GCTGCCATAT CGCCCATTGC GGGCATGGAC AACTCACCGC CCATGACCTT GACCGGCACT TCAATCGTTG GATTTTCAGA AGTCATCGAC AACCAATCGA ACTGGATGTT GATCGACAGA ACTCCAATAG CGTTGTCTCC AACCATGAAC GTTTCTACTC AGATAACAAT TCATGCCTGA GAAAATCTGT CTGGGAGACA CTCCCACTTC CCGATGTTGT TTATGGTGAA GATCAATTAT GGGCACGTGA AATACTCAGA AAAGGCTACA AAAAGGCCTA TGCATCAACA GCTGTTGTTC GCCATTCCCA CGAATACGAT TTTCGGGAAA CAGTTATGCG CGCCAACACT GAATGGCACT TTTACAATCA GCTTCTTGGA GAAAGTCTGC CTTCCACCAA AGATCAAGTT TTACAAATGG TTGAACAAGC TTGTACCAAC GACCGAGAGG CTCAGAAACT GTACCCAGAC GTCAGCGACG ACGATTTAAT CCATCGGCGT CGGATTCATT TTGCTCGTGC TTGTGGCTAC TACCTGGCCG CGAAAGGACA TGGGGAACTT CGACCCTAA
|
Protein sequence | MSGMPKNRHP LSALSHTTKQ VLKRSASAMG RQKILPKALR KQFNRLGQAK HSAPPNNRRK KTTPELQDYI KNLQSKDINK KIIRDFRELA HYAYVFDIEQ YRAQLEREEA EGLKCIGDVI LHYCTSGSKK GIDPSILFDT DNYLSKYPDV RESGLNPMVH CFKFGMNEHR YSMDNIHFMR KMADIKKTVT DDFNAIKEGL INKKVGIFLH IFYPELGETI AAYLKNIPCS IDVFISTRED SVAALEKIFA RVENTQKIEV RHFSNIGRDV APFIVGFRDQ ILNYDYILKL HSKKSPHSNA LSGWFLHCLD NLIGSEAITA TNLKALQSPE VGIVYPIENY ALSLGIQHDS CWGHEDGNYA KARPFLNRYN LRQIKRESQF QFPTGTMFWC KPAVLQSILD WGLNWNNFDE EGGQIDGTIA HSIERLIGIS TTEIYKQKIL TTYAGYLLSK QHIHDKSIIE DRNKLCIDGF EKVIQFTPQR LDTNWSLKKN INTKSLHIHW VIPNFTPGLG GHMTIFRTIE YLERCGHQCT IWVHSELKGN DKPSRLSSLH KRVINQSFIS LDTDQVYMLG NNQDDLDLVS GDVVIATDRM STYPVLGMKK FQKRFYFVQD YEPYFFARGS SSILTEQSYA SDNNFFCICA SPWLKQKMES FGNLAISFPL AVDHSVYYPK NEEKRKRDAI AFYVRRSTPR RLYELGLLAL RALFDLGDHF EIITFGEKDL PDLGIPVKVR HAGILDADAL ANLYRQCAVG LVLSGTNYSL VPNEMMACGL PVVDIDAEHT RISYQPETAV LAKPTPIELA SALSRLLNDA SFRQSTAKAG LAATEQLTWD GSNKLIEAFI QESLSSAQSL PRQLQSSTPL VTIVIPVYNG GTMLKTVIES CLSQDLDQEF EVLLIDSASS DGCLDALPQD ERLHLHRIKQ EDFGHGRTRN LGVELARGEY VAFITQDAIP ANRMWLMNLI APLQKDPNVA GVFGCHIAHC GHGQLTAHDL DRHFNRWIFR SHRQPIELDV DRQNSNSVVS NHERFYSDNN SCLRKSVWET LPLPDVVYGE DQLWAREILR KGYKKAYAST AVVRHSHEYD FRETVMRANT EWHFYNQLLG ESLPSTKDQV LQMVEQACTN DREAQKLYPD VSDDDLIHRR RIHFARACGY YLAAKGHGEL RP
|
| |