Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Syncc9605_1430 |
Symbol | |
ID | 3735967 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus sp. CC9605 |
Kingdom | Bacteria |
Replicon accession | NC_007516 |
Strand | - |
Start bp | 1342187 |
End bp | 1344118 |
Gene Length | 1932 bp |
Protein Length | 643 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637776023 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_381739 |
Protein GI | 78212960 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0817623 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATCTCG GAGATCTGAA GCATCCGAAT GAACTGCACG GACTCAGCCC GGCTCAGCTC GAGGACGTGG CTCGGCAGAT TCGTGAGCGG CATCTGCAGG TGGTGTCCAC AAGCGGTGGT CACCTAGGGC CTGGCCTGGG GGTTGTCGAG CTGACCCTTG CGTTGTACCA AACGCTGGAT CTCGACCAGG ACCGTGTGAT CTGGGATGTG GGCCATCAGG CTTACCCCCA CAAATTGATC ACCGGCCGGT TCAACGATTT CGACTCTCTG CGTCAGCAAC ACGGGGTAGC GGGGTACCTC AAGCGCACTG AGAGCGACTT CGACCACTTC GGAGCGGGCC ACGCCAGCAC CTCCATCTCA GCGGCGCTGG GCATGGCCAT GGCGCGAGAT AACCATGGTG AATCGTTCAA GTGTGTTGCC GTCATCGGTG ATGGAGCCCT GACAGGCGGC ATGGCTCTGG AGGCCATCAA CCATGCCGGA CACCTCCCGA ATACACGGCT CTTGGTGGTG CTGAACGACA ACGACATGTC GATTTCCCCG CCGGTGGGGG CCTTGTCGAA CGTGCTGAAC CGTGCGCGGC TCAGCCCGCC GATGCAGTTC CTCTCAGGGA GTGTTGAGGA GAGCGTTCGG CACCTGCCGT TCATGGGTGG CGAGATTCCT GCGGAACTCA ACCGTCTCAA GGGCAGCATG CGTCGCCTCG CGGTACCCAA GGTGGGTGCC GTGTTCGAGG AACTGGGCTT CACCTACATG GGGCCGATCG ATGGCCATGA CATCGGTGAA ATGGTGCGCA CCTTCCAGGC GGCCCATCGA GAAGGCGGCC CGGTGCTGGT GCATGTGGTC ACCAAAAAGG GCAAGGGCTA TCCCTATGCC GAGGCCGATC AGGTCGGTTA TCACGCCCAA TCGGCCTTTG ATCTCGGCAC CGGCAAGGCA ATCCCGTCAT CGAAACCCAA ACCTCCCAGC TACAGCAAGG TGTTTGGGCA GACCCTGGTC AAGCTCTGTG AGCAGAACAG TCGGGTGATC GGCATCACTG CGGCCATGGC CACCGGTACC GGTCTCGACC TGCTTCAGAA GGCTGTTCCG GACCAGTACG TGGACGTCGG CATTGCTGAG CAGCATGCCG TCACCCTGGC GGCGGGCATG GCCTGCGAGG GGTTGCGCCC CGTCGTTGCC ATCTACAGCA CCTTCCTGCA GCGCGCCTAC GACCAGTTGA TCCACGATGT GGGCATCCAG AAGCTGCCGG TCACCTTCGT GCTTGATCGC GCCGGCATCG TTGGTGCTGA CGGTCCGACC CACCAGGGTC AGTACGACAT CAGCTACATG CGGGCCATTC CCAACTTCAC AGTGATGGCA CCGAAGGATG AAGCTGAGCT GCAGCGGATG CTGGTGACCT GCCTGCAGCA CGACGGGCCC ACGGCGTTGC GAATTCCCCG GGGCTCCGGG GAAGGCGTGC CGTTAATGGA AGAGGGTTGG GAAACGCTGC CGATCGGCCG CGGTGAACTG CTGCGGGAAG GCGACGATCT GATGATCGTG GCTTACGGCT CGATGGTGGC GCCGGCCCTT GCGACTGCAA CGCTGCTCGA GGAAGCCGGG CTCTCCACCA CTGTGATCAA CGCCCGCTTC CTGAGGCCCC TGGATCAAGC GCTGATCCAT CCCCTGGCGC GGCGCATCCC CCGTGTCGTC ACCATGGAGG AGGGAGCTCT TCCGGGTGGT TTTGGTGCAG CGGTTCTGGA GTCACTGACT GATCAGGACA TCAACGTGTC GATGCTGCGC ATTGGCATCC CTGACAAGCT GGTCGATCAC GCCACGCCGC AGCAGAGCAA GGAGGCTCTC GGCCTGACTC CTGCGCAGAT GGCTGAACGA ATCCTTGAGC GCTTCAGCAA CACCTCGGGT GATCTGCCAG CCAGCGCTTC GATCAAGGCC CTGCAGGCCT GA
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Protein sequence | MHLGDLKHPN ELHGLSPAQL EDVARQIRER HLQVVSTSGG HLGPGLGVVE LTLALYQTLD LDQDRVIWDV GHQAYPHKLI TGRFNDFDSL RQQHGVAGYL KRTESDFDHF GAGHASTSIS AALGMAMARD NHGESFKCVA VIGDGALTGG MALEAINHAG HLPNTRLLVV LNDNDMSISP PVGALSNVLN RARLSPPMQF LSGSVEESVR HLPFMGGEIP AELNRLKGSM RRLAVPKVGA VFEELGFTYM GPIDGHDIGE MVRTFQAAHR EGGPVLVHVV TKKGKGYPYA EADQVGYHAQ SAFDLGTGKA IPSSKPKPPS YSKVFGQTLV KLCEQNSRVI GITAAMATGT GLDLLQKAVP DQYVDVGIAE QHAVTLAAGM ACEGLRPVVA IYSTFLQRAY DQLIHDVGIQ KLPVTFVLDR AGIVGADGPT HQGQYDISYM RAIPNFTVMA PKDEAELQRM LVTCLQHDGP TALRIPRGSG EGVPLMEEGW ETLPIGRGEL LREGDDLMIV AYGSMVAPAL ATATLLEEAG LSTTVINARF LRPLDQALIH PLARRIPRVV TMEEGALPGG FGAAVLESLT DQDINVSMLR IGIPDKLVDH ATPQQSKEAL GLTPAQMAER ILERFSNTSG DLPASASIKA LQA
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