| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4827 |
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| Symbol | |
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| ID | 6119204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5812671 |
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| End bp | 5815568 |
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| Gene Length | 2898 bp |
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| Protein Length | 965 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641636408 |
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| Product | M6 family metalloprotease |
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| Protein accession | YP_001763171 |
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| Protein GI | 170729145 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4412] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03296] M6 family metalloprotease domain
[TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATATCGA AAAGCAACGG AGGCATACTC TCCAAAATAT GTTTCTCTAT TACGCTCTCT
TTAATGGGCT CGACCTTGAT GGCTAAACCT CTGGATCTTG CTAACGCGAC TTTGGCTGAT
GCTGGAGTGG TGAATAAGGA GCAGATCTTA TACTGGCTAA TTAAGCGTGG AGAGATCTCC
GAAGATGCAT CTATTGATGA AAAAGCCGCC GCCGTAGACG CATACTCATA TCGCAAATTT
GGGGGCAGGA ATAAAGGCGA TTTACTGAAT GCCAAATTTG AGCAGAAACG GTTAAAAGCG
CTTAAAAAGC ATAAGGTGCA GAAAAGTCGT AAAGGGTTTA GTGCTCAGCA GTTAGAAGCA
GAGGCTCAGG CTGATAGTGA CGTGACTAAA ACCGTCAAAG TGTTGGGAGT TTTAATCGAT
TTTCCAGATC TCCCCTATGA TAATAATCGC CTCTCTGCCA GCGATACTGA TATGTATTAC
CCTAGTTATC CTAACTCCCA TTATGATGAT TTGATGTTTT CTACTACAGG TTTTACTGGC
CCTCAGGGAC AGAATTTGCA AACCGGGTAT CAATATTATC AGGCAGTGTC TGGTGAGAGC
TTCTTCTTTA CTGGTGAGAC AAAGGGTTGG TTTACTGCTG AAAACAATGC AGCCTATTAC
GGTGGGAATG ATGATAACGG TGATGATAAA GCGGTACCAG AGCTAGTTAA AGAGGCTGTC
ACCCAAGCTG TTGCAGGCAT GTCCAGTGCT GAACTTGCTA GCTATGATGT CGAAGATCCA
ATGGATCTCG ATGGTGACGG TAACTTCGAT GAACCTGATG GTAATATCGA CCATGTGATG
TTGTTTCACT CCAGTATCGG TGAGGAGGCG GGTGGTGGCG TGATGTCTAA TGGTGGTAAA
GACGCTATCT GGTCCCATCG ATTCTTTGTT TACACAGGCA GTAACCCTGG ATATACCATA
CCTGGCACAG GAATGAAGGT GTTTGGCTAT ACTGTTCAGC CTATTGATGC AGCGGCGGGT
GTGGTTGTTC ATGAGTTTGG TCACGATCTA GGTTTGCCAG ACGAGTATGA CACTAGTTAT
GAAGGGGACG GCTCTCCCGT AGGTTCATGG TCTGTGATGT CTGGTGGTAG TTGGACTGGT
AGCATTGCTG GAACTCAACC GACAGGTTTT AGTCCCTATG CAAGATCTTA TCTTCAGGAG
AGATATAAAG GGCGTTGGGT TAATGAGCAG GAGATTCAGC TTAATACGAT TGATGATTCA
GGGGTTGAGG TCGTACTCAA TGAAGCGGTA AATCACGGCT TTGTTAATCA ACTCTCTATT
CCTTTGCCTG CAACACCTAT CCCTTTTAAA GCCCCTTATG CTGGAGAGTA CCAATACTAC
TCCAATCAGG GCAATCTGAT TAATAATGCG CTCTCATTTG ATGTTAGCTT GCCGAGCTTA
ACGCCACTGA GTTTAACCAT GAAGGCCCAT TGGAATATTG AGCAAGATTA CGATTATGCT
CAGCTAATGG TCAATGGTGT GCCAATTGAA GGTAACCATA CTAAAGCCAG TAACTTAATT
AACGATGCAA GAAACATCAT TACCGCAAGC TCAGCAGATA TTGCGGGAGC CGAAGGCAGC
AATAACTGGG TTGATCTGGT GTATGACCTC AGTAGTTATG CGGGGAGCTC AGTTAGGATA
AGTTTAATCT ATAAAACTGA CGTGGGCTTA AGCGAGTATG GGATAGTTAT CGATAACCTT
GAGCTGACTC AAGGAGCGAG CTCTGTTTAT TCAGATGATG CTGAAACTGC AGGCCGAATG
GATCTTGTTG GTTTCTCTAG AATAGATAAT CAACGCCCAG GGGCTGCGCG TCGTTATATC
GTACAGTTGC GTAGCCATAA TGGTGTCGAT GCAGGGCTTG ATAGTCACTC CTATGAGCCT
GGTGTGCTGC TATGGTTAGA GAATTTTAGC TATGCAGATA ATAACTCTAA CTCACACCCT
GGAGTCGGTT TGATTGGGGT TGTCGATGCG GATCAGCAGA TGATTCTCGG TGGTAATGGA
GGGTCTGATA CGCAAATTCG TGATGCTACT TTTAGCCTGT TTAATCAGTC GAGCTTTTCT
GGTGATGAGA ACCTATCTGC CATCTCCACC TTCGATGATA GCCTAGACTA CAGTGCGCCA
CTTCAACCTC AATCGGGCAT TATTTTGCCG AAACTTGGTT TAACCATGGA GGTGGTAGAG
CAAAATGTCG ACTCATCTCT TGCTAAGCTC GAGTTTAATT TTGCGGGATC AACTACGCCG
CCTCCAACAT CTAATCTTAG CTCTGAATTC AGTACTACTG AGGAAGTTAA AGGAACAGTG
CTCTTTACCC CAACAGTGAC AGGTGGTGAT GGTAATTACT CCTACCTATG GAGCTTCGGT
GTTACAGGAG CCATCAGTGC AGAGGTAGAA CCTAGCTACA CCTATGGTGC ATCTGGCAGT
TATTTGGTGA CACTTAAGGT GACTGACGGC CTAGGCTCGA CTGTAGAGAG CAATCAGACT
ATTGCGGTTA CACTGCCCGT TGTCCCTGTT GCTGGATTTA CCTCTTCAAA CAACAATTTG
GCAGTGACCT TTACCGATGG GACGACGGGA GGAGAAGGTG CCTTAAGCTA TGCTTGGCAG
TTTGGTGACG GACAAACCAG CAGTGCTCAG TCACCAACAC ATACCTATGG TTCTGCTGGC
ACCTACAGTG TTACCTTGAC CGTTACCGAT AGCCTGAATG TGCAGAGTAG CAGTACTAGC
TCTGTCACTG TGACCGCTCC AGTTGTGCCA GCAACAAACG CGGCGAGTTC TGATGACGCT
GGTTCTGGTG GCGGTAGCCT TGGTTGGTTA ACACTATGTT TGTTGGGATG GTTAGGTATT
AGAAGAGCGA GTAGCTAG
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| Protein sequence | MISKSNGGIL SKICFSITLS LMGSTLMAKP LDLANATLAD AGVVNKEQIL YWLIKRGEIS
EDASIDEKAA AVDAYSYRKF GGRNKGDLLN AKFEQKRLKA LKKHKVQKSR KGFSAQQLEA
EAQADSDVTK TVKVLGVLID FPDLPYDNNR LSASDTDMYY PSYPNSHYDD LMFSTTGFTG
PQGQNLQTGY QYYQAVSGES FFFTGETKGW FTAENNAAYY GGNDDNGDDK AVPELVKEAV
TQAVAGMSSA ELASYDVEDP MDLDGDGNFD EPDGNIDHVM LFHSSIGEEA GGGVMSNGGK
DAIWSHRFFV YTGSNPGYTI PGTGMKVFGY TVQPIDAAAG VVVHEFGHDL GLPDEYDTSY
EGDGSPVGSW SVMSGGSWTG SIAGTQPTGF SPYARSYLQE RYKGRWVNEQ EIQLNTIDDS
GVEVVLNEAV NHGFVNQLSI PLPATPIPFK APYAGEYQYY SNQGNLINNA LSFDVSLPSL
TPLSLTMKAH WNIEQDYDYA QLMVNGVPIE GNHTKASNLI NDARNIITAS SADIAGAEGS
NNWVDLVYDL SSYAGSSVRI SLIYKTDVGL SEYGIVIDNL ELTQGASSVY SDDAETAGRM
DLVGFSRIDN QRPGAARRYI VQLRSHNGVD AGLDSHSYEP GVLLWLENFS YADNNSNSHP
GVGLIGVVDA DQQMILGGNG GSDTQIRDAT FSLFNQSSFS GDENLSAIST FDDSLDYSAP
LQPQSGIILP KLGLTMEVVE QNVDSSLAKL EFNFAGSTTP PPTSNLSSEF STTEEVKGTV
LFTPTVTGGD GNYSYLWSFG VTGAISAEVE PSYTYGASGS YLVTLKVTDG LGSTVESNQT
IAVTLPVVPV AGFTSSNNNL AVTFTDGTTG GEGALSYAWQ FGDGQTSSAQ SPTHTYGSAG
TYSVTLTVTD SLNVQSSSTS SVTVTAPVVP ATNAASSDDA GSGGGSLGWL TLCLLGWLGI
RRASS
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