Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4781 |
Symbol | |
ID | 6119158 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5769679 |
End bp | 5770353 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641636362 |
Product | pseudouridine synthase Rlu family protein |
Protein accession | YP_001763125 |
Protein GI | 170729099 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0134814 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000101532 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGTACCAGA TAGTTGCCGA TGAAACCGAT TTTATCGTGA TCGCTAAGTC CCATAATGTT CATTTTCATA GTCAAGATGG TAGTGCTGGT GTGATGGCGA AGCTTGAGCA AGATTTAGGG GTTAAACTCT TTTCTGTGCA TAGACTAGAT ACCTTGACGT CGGGGCTTTT GTTGTTTGCT AAGTCGAGTC AAGCAGCTGC TGAGTTTACC CGTTTGTTTA CTGAGCATAG AGTACAGAAG TATTATCTAG CTTTAGCGAA AGGAAAGCCA AAGAAGAAGC AAGGCTCGAT TATTGGTGAT ATGGCTAAGT CTCGCCGTAG CATGTATAAA TTGATGAGAA CTATGGATAA TCCGGCTAAA ACGCAGTTCT TCTCTCAGTC GGTGGCAGAG GGGCTACGTC TGTATCTGCT AAAGCCGTTA AGTGGCAAGA CTCACCAGTT AAGAGTTGCA CTTGCGAGTA TAGGTGTGCC TATTTTAGGT GATACACTTT ATGGTGGTGA GGAGTCGGAC AGAGGCTACT TGCACGCCTT TAGTTTGCAC TTTATTTTTA GCGGTAAAGA GTATCAATAC ATCAATTACC CTAGTGAGGG AGTGAGTTTT ACTGCCCTTA ATACAATAAA GCAGTTGCAA ATGTGGTCAG AGCCTGAGAA GTTAGATTGG CCTAAACAGA AATAA
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Protein sequence | MYQIVADETD FIVIAKSHNV HFHSQDGSAG VMAKLEQDLG VKLFSVHRLD TLTSGLLLFA KSSQAAAEFT RLFTEHRVQK YYLALAKGKP KKKQGSIIGD MAKSRRSMYK LMRTMDNPAK TQFFSQSVAE GLRLYLLKPL SGKTHQLRVA LASIGVPILG DTLYGGEESD RGYLHAFSLH FIFSGKEYQY INYPSEGVSF TALNTIKQLQ MWSEPEKLDW PKQK
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