| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4733 |
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| Symbol | |
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| ID | 6119110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5710391 |
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| End bp | 5711962 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641636315 |
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| Product | general secretory pathway protein E |
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| Protein accession | YP_001763078 |
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| Protein GI | 170729052 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0457665 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAGTG AGACACAAGC AACACAAATT GATGAACTCG CTCAAGTCAG TGATGAGCTT
GGCTTAACCG CTGAGAGTGA AACCGATGAG GTGTTTCACT CTAACAGTAA GGAGCGCCTG
CCATTTGCTT ATGCCCACCG CTTCAAGGTG GTGCTCGATA AGCGTGATGA TGAGCTAACC
CTGTTTCACA CCAGCGAGTC TCCTGTTACA GCTTTACTCG AAGCGAGACG CTACACAGGT
CGTAACTTGC CTCTTGTTGA ACTGGCTGCA CCAGAGTTTG AAACTAAACT AACCATGGCT
TATCAAGCTA ACTCTTCTGA AGCTCAGCAG CTGATGGAAG ATATTGGTAA CGAGATGGAT
CTGTTTACTC TGGCCGAAGA GCTACCTCAA ACGGAAGATC TGTTAGAGGG TGATGACGAT
GCACCGATCA TTAAGTTGAT CAACGCTCTG CTCTCTGAAG CGATCAAAGA GGAAGCATCG
GATATCCATA TCGAGACCTA CGAGAAGCAG TTAGTGGTTC GCTTCCGTGT CGATGGTGTC
TTGAAAGAGG TGCTTAAACC TAATCGTAAA CTCTCATCGC TACTGGTTTC TCGTATCAAG
GTGATGGCGC GTTTGGATAT TGCTGAGAAG CGCGTTCCAC AAGATGGCCG TATCTCATTG
CGAATTGCTG GCCGAGCAGT GGATGTGCGT GTATCTACTA TGCCTTCTAG CCATGGTGAG
CGTGTGGTAC TGCGTCTACT GGATAAGAAT GCTGGTAACC TAGATCTTGT GCAGTTGGGC
ATGACTCACA ATGTGCAGGT TCAGTTTGAA GAGCTTATCC GTAAGCCTCA CGGCATTATT
TTGGTGACCG GTCCAACAGG TTCAGGTAAG AGTACCACCC TGTATGCGGG CTTAACTGAG
CTTAACTCTA AAGATACCAA TATTCTGACT GTAGAAGATC CTATCGAGTA TGAACTTGAG
GGGATAGGCC AGACTCAGGT GAACACTAAG GTTGATATGA CCTTCGCCCG TGGATTGAGA
GCGATTCTGC GTCAAGATCC TGATGTGGTG ATGATAGGTG AGATTCGAGA TTTAGAAACG
GCGCAAATTG CGGTTCAAGC ATCATTAACT GGTCATATGG TGTTATCGAC ACTGCATACC
AACACAGCAG CAGGTTCGAT CACTCGACTA CAAGATATGG GAGTTGAGCC TTTCCTTGTC
TCCTCGAGTC TACTTGGTGT ACTAGCCCAA CGTCTGATCC GAACCTTGTG TCCAGATTGT
AAGTCTGAGC ATATACCGGA TCAAAGTGAG CGCGACCTAC TCGGTATGTC AGCTGACGAT
ACTCGGGTTA TCTATCGCGC CGAAGGGTGT AAGAACTGTG GCCATAACGG TTATCGTGGT
CGTACTGGTA TCCATGAGCT GTTAGTGGTC GATGATGATG TGCGTGAACT CATCCATACT
GGACGAGGCG AGCTTGCCAT CGAGAAACAC ATACGTAAGA GCACGCCGAG TATTCGACAC
GATGGTATGA GTAAAGTTCT TGCAGGTCGA ACGACCTTGG AAGAGGTGTT ACGTGTTACT
CGTGAGGAGT AG
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| Protein sequence | MMSETQATQI DELAQVSDEL GLTAESETDE VFHSNSKERL PFAYAHRFKV VLDKRDDELT
LFHTSESPVT ALLEARRYTG RNLPLVELAA PEFETKLTMA YQANSSEAQQ LMEDIGNEMD
LFTLAEELPQ TEDLLEGDDD APIIKLINAL LSEAIKEEAS DIHIETYEKQ LVVRFRVDGV
LKEVLKPNRK LSSLLVSRIK VMARLDIAEK RVPQDGRISL RIAGRAVDVR VSTMPSSHGE
RVVLRLLDKN AGNLDLVQLG MTHNVQVQFE ELIRKPHGII LVTGPTGSGK STTLYAGLTE
LNSKDTNILT VEDPIEYELE GIGQTQVNTK VDMTFARGLR AILRQDPDVV MIGEIRDLET
AQIAVQASLT GHMVLSTLHT NTAAGSITRL QDMGVEPFLV SSSLLGVLAQ RLIRTLCPDC
KSEHIPDQSE RDLLGMSADD TRVIYRAEGC KNCGHNGYRG RTGIHELLVV DDDVRELIHT
GRGELAIEKH IRKSTPSIRH DGMSKVLAGR TTLEEVLRVT REE
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