Gene Swoo_4657 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4657 
Symbol 
ID6119026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp5637074 
End bp5638324 
Gene Length1251 bp 
Protein Length416 aa 
Translation table11 
GC content44% 
IMG OID641636231 
Productcytochrome c-type biogenesis protein CcmI 
Protein accessionYP_001763002 
Protein GI170728976 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG4235] Cytochrome c biogenesis factor 
TIGRFAM ID[TIGR03142] cytochrome c-type biogenesis protein CcmI 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000855985 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCACTC TTTGGATTTT TATTGCGCTT TTCTTATTAG TCAGCCTAGT GCTGATTTGG 
TTTCCTCACT TTCGACAGCA AAAGATGCTG CAGACGGAAG AAGCTGGGGT ACGTAAACAA
ACAAACCTCG AACTATTTAA CAATCGTCTT GCAACATTAG AGAAAGAACT TGAAGATGAA
CAGCTAGATC AAGTTGAGTT CGACGCCCTC AAAAAAGAGC TTGAGATAAG CTTACTCCAA
GATATGAAGC AAGGTAGTAG TGATGAGTCT CTTGTCACTA AGATGAAACC AAAAGGCTTA
CTATGGCCTG TGGTTATGTC TGTTGCCGTA TTAGGTATCT CTGGATACTT TTATACCAGC
TTAGGCGCCT ACGCTAACTT AGACAAAACA GAGCAAGCTA GCCCACATGC TGGCATGACT
GCAGATCAAG TTATGCAACA ACGTCTACAG ATGATGGAAG CGCAAGCTAA AGCTGAGCCT
GAGAACAGCC AGTTACTCTT TAGCCTTGGC CATAGTTACA TATCTGCCAA CCGTTATGAT
GACGCGATAA AGACTTTCGA TAAAGCAATG GTATTAGTAG GCACACACGC TGAGCTACTC
GGACCAAAAG CGACAGCCAT GTACTACAAG GCAAACCAGC AGATGACACC TGCGGTACAA
GCTATTGTTG ATCAAGCTCT GTCTCTGGAT CCTGAAGACC CATCAACACT TCTGTTAGTA
GGTATGGATT CATTCTTTAC TGCTAATTAT CAGAAAGCGA TAGATTCATG GCAGATCATT
CTCGATAGCG ACCGTAAAGA TGTCGATCGT AGTGCCATCA TTAATGCTAT CGATAGCGCT
AAGATGAGAA TGCAGGCAGA TACCGGCGAA ATGCCAAATG ACGCAGCCCA TGCCAATGTT
CAAAACACGG CTAAGACTGT TAATGTCGAA GTTTCAGTAT CAGATGAACT AGCTCAGCAG
GTTGGCAGTT CAGACATGCT ATTCATCTTC GCTCGCAACA CTGAAGGCCC TAAGGTGCCA
TTAGCTGCAG TTAAAGTCTC CGCAAAATCG CTACCAACAA CAATCACATT GGATGACACG
ACCTCTATGG GCGGCGATGT GAAGTTAAGT GGAGCTAAGC AAGTTGAGAT TATTGCGGTT
CTGTCTAAAC ATGGAACGGT TAAACCACAA TCAGGCGATC TTAAAGGTCA CCTTGCAATG
GTTAATGTCG GTGATACCGC TCAGCTAATT ATCGACACTC AAGTCAAATA A
 
Protein sequence
MTTLWIFIAL FLLVSLVLIW FPHFRQQKML QTEEAGVRKQ TNLELFNNRL ATLEKELEDE 
QLDQVEFDAL KKELEISLLQ DMKQGSSDES LVTKMKPKGL LWPVVMSVAV LGISGYFYTS
LGAYANLDKT EQASPHAGMT ADQVMQQRLQ MMEAQAKAEP ENSQLLFSLG HSYISANRYD
DAIKTFDKAM VLVGTHAELL GPKATAMYYK ANQQMTPAVQ AIVDQALSLD PEDPSTLLLV
GMDSFFTANY QKAIDSWQII LDSDRKDVDR SAIINAIDSA KMRMQADTGE MPNDAAHANV
QNTAKTVNVE VSVSDELAQQ VGSSDMLFIF ARNTEGPKVP LAAVKVSAKS LPTTITLDDT
TSMGGDVKLS GAKQVEIIAV LSKHGTVKPQ SGDLKGHLAM VNVGDTAQLI IDTQVK