Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4583 |
Symbol | |
ID | 6118949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 5553763 |
End bp | 5555874 |
Gene Length | 2112 bp |
Protein Length | 703 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641636154 |
Product | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase |
Protein accession | YP_001762928 |
Protein GI | 170728902 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00343427 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000056206 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | TTGTATCTGT TTGAAGGTCT CAAGGAGTCT GCATCAGGGT ATTTAGAACC TGATCAGGTA GAATTACTCA AGCAGGCCTA TCAGGTGGCG CGTGATGCCC ATGAAGGTCA AATGCGCACA AGTGGTGAAC CTTATATCAC ACACCCGGTT GCGGTCGCCC GCATTCTGGC CGATATGCGT CTCGATCATG AGACGCTTAT GGCTGCTCTC CTGCACGACA CCATCGAAGA CACCCCTGTC ACCAAAGAGG AGCTGGCTGA GTTATTCAGT GAATCTATTG CCGAACTGGT TGAGGGCGTC TCAAAACTCG ATAAGCTAAA ATTCCGCGAT AAGAAAGAGG CCCAGGCCGA AAACTTCCGC AAAATGATGA TGGCCATGAC CCAAGATATT CGGGTTATCC TTATCAAACT AGCCGATCGT ACCCACAATA TGCGCACCCT TGGGGCTTTA AGGCCTGACA AGCGTCGTCG TATAGCGCGG GAAACCTTAG AAATCTATGC CCCGATTGCC AACCGTCTCG GTATTCATAA CATCAAGACC GAGCTCGAAG ATCTTGGCTT CCAAGCCTAC TACCCAATGC GTTATCGCGT ACTTAAAGAG GTAGTTAAGG CCGCACGTGG CAATCGTAAA GAGCTCATTC AAAGTATTGA AGCTGCAGTT CACACTCGCC TCGAAGACAC TAAGATCCCA GGTACAGTGA AAGGCCGAGA GAAAAACCTC TACTCCATCT ATAACAAGAT GTGCAGTAAG GAGCTTCAGT TCCAAGAGGT CATGGATATC TACGCGTTTC GCGTCATAGT GGACTCCATC GATACCTGCT ACCGAGTCTT AGGTGCAATG CATGCCCTAT ACAAGCCTCG TCCAGGTCGA TTTAAAGATT ATATTGCTAT CCCTAAAGCC AATGGCTATC AGTCACTCCA TACGTCACTG TTTGGTCCTC ACGGCGTTCC TGTTGAGATC CAGATCCGTA CCGAAGATAT GGATCAGATG GCAGATAAAG GGGTTGCAGC GCACTGGATC TACAAAAAAG GCAGCTCAGC TGAGCAAGGC ACAACGACAC AAGTTCGTGC ACGTAAGTGG ATGCAGAGCC TGCTTGAATT ACAACAAAGC GCCAGCACCT CATTTGAGTT TGTTGAAAAC TTTAAGACAG AGCTTTTCCC AGAAGAGATC TACGTATTCA CCCCTGAGGG TCGAATTTTA GAGCTTCCTG TTGGCGCAAC ACCCGTCGAT TTTGCTTACG AAGTGCATAC CGATGTGGGT AATACCTGTG TTGGCGCACG AGTCAATCGT CAAGCATACC CGCTAAGCCA ACCTCTGATT TCAGGCCAAA CCGTTGAAAT TATTACGGCT AAAGGCGCCC GCCCTAATGC GGCATGGCTA AACTTTGTGG TCACAGGTAA GGCTCGCGCT AAGATACGTC AACTGCTGAA AAGTTTAAAA GAGGATGACG CAGTCATCTT AGGTAAACGC CTACTGAATC ATGCGCTAGG TGATACCAAA CTAGATATGA TCACACCCGA GCAGATTGAG AAAGTTGTCA GTGACACCAA GCACGACACC CTCGAAGAGC TACTGGTCGA TATCGGTTTA GGTAATGCCA TGAGCATAGT CATTGCCCAA CGACTTAAAG GCGATCAGGA ACAGATCGAG CCCCATGAGC ATAAAGAATC TAACATGATG CCGATCCGCG GTGCAGAGGG GATGTTAGTC ACATTCGCCA ACTGCTGCCG ACCAATCCCA GGTGATGCAG TCATCGCCCA TGTGAGTCCA GGTAAAGGCT TGGTTGTTCA TATGGAGAGC TGCGCGAATA TCCGTGGCTA TCAAGGTGAG CCTGATAAAT ATATTCCTGT GCAGTGGGAT AACGCCGAAG GTGTTGAGTT CCAAGCTAAC TTACGAGTTG AGATTGTGAA CCATCAAGGT GCTCTGGCCA AGATCACCTC GATTGTAGCT GCTGAAGGTG CCAATATTCA TAACCTAAGC ACAGAGGAGC GAGACGGCAG AGTCTTCCTC ATCAATTTAC GAATCTCGGT CACTGATCGA ATTCATTTAG CCAACGTGAT GCGCCGTATC AGGGTACTAC CTGAAGTATT ACGTACATCC CGTAATCGAT AA
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Protein sequence | MYLFEGLKES ASGYLEPDQV ELLKQAYQVA RDAHEGQMRT SGEPYITHPV AVARILADMR LDHETLMAAL LHDTIEDTPV TKEELAELFS ESIAELVEGV SKLDKLKFRD KKEAQAENFR KMMMAMTQDI RVILIKLADR THNMRTLGAL RPDKRRRIAR ETLEIYAPIA NRLGIHNIKT ELEDLGFQAY YPMRYRVLKE VVKAARGNRK ELIQSIEAAV HTRLEDTKIP GTVKGREKNL YSIYNKMCSK ELQFQEVMDI YAFRVIVDSI DTCYRVLGAM HALYKPRPGR FKDYIAIPKA NGYQSLHTSL FGPHGVPVEI QIRTEDMDQM ADKGVAAHWI YKKGSSAEQG TTTQVRARKW MQSLLELQQS ASTSFEFVEN FKTELFPEEI YVFTPEGRIL ELPVGATPVD FAYEVHTDVG NTCVGARVNR QAYPLSQPLI SGQTVEIITA KGARPNAAWL NFVVTGKARA KIRQLLKSLK EDDAVILGKR LLNHALGDTK LDMITPEQIE KVVSDTKHDT LEELLVDIGL GNAMSIVIAQ RLKGDQEQIE PHEHKESNMM PIRGAEGMLV TFANCCRPIP GDAVIAHVSP GKGLVVHMES CANIRGYQGE PDKYIPVQWD NAEGVEFQAN LRVEIVNHQG ALAKITSIVA AEGANIHNLS TEERDGRVFL INLRISVTDR IHLANVMRRI RVLPEVLRTS RNR
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