| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4553 |
|---|
| Symbol | |
|---|
| ID | 6118919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5522062 |
|---|
| End bp | 5522526 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641636124 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001762898 |
|---|
| Protein GI | 170728872 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00449757 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAC CGATTCAATA CGAGATCCTA CAGCGAGTTG CAGAGGTCTT TGATAAGCAG
GTTCCCTTTC ACAATCTGCT AGGCATGGAT ATTAAACGAT ACGACCTTGA TGGGGTTGAA
GCAGTGGTGA ATATGAAACC TGAGCTTATA GGTAATATTC ACCAGCAGAT CTTGCATGGT
GGGGTTACAG CCACAGTGTT GGATGTTGTC GGTGGGCTCA CCGCCTTTTC AGGCCTAGTC
GCCAGTCGTG ATGATTGGAG CATTGAAGAT CTACAGACCC GACTGCAAAC CTTAGGCACG
ATAGATCTTA GAATTGACTA TTTGCGTCCC GGTAGAGGAA CAATATTTAC TGGTACCGGT
ACTGTAATAC GTGCTGGCAA CCGTGTTTCT GTTTGCCGAA TGGAGCTTCA TAATGAAAAT
GGCGATCATA TTGCATTTGG AACAGGTACT TACATGGTCG GTTAA
|
|---|
| Protein sequence | MTTPIQYEIL QRVAEVFDKQ VPFHNLLGMD IKRYDLDGVE AVVNMKPELI GNIHQQILHG
GVTATVLDVV GGLTAFSGLV ASRDDWSIED LQTRLQTLGT IDLRIDYLRP GRGTIFTGTG
TVIRAGNRVS VCRMELHNEN GDHIAFGTGT YMVG
|
|---|
| |