Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4550 |
Symbol | |
ID | 6118916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5516103 |
End bp | 5517674 |
Gene Length | 1572 bp |
Protein Length | 523 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641636121 |
Product | 2-isopropylmalate synthase |
Protein accession | YP_001762895 |
Protein GI | 170728869 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.518555 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0133708 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTAACC GAGTGATTAT TTTTGATACA ACCCTACGTG ATGGGGAGCA AGCCCTAGCG GCCAGTTTGA CGGTTAAGGA AAAACTACAG ATAGCACTCT CATTGGAGCG TTTAGGTGTC GATGTGATGG AGGTGGGCTT TCCTGTTTCC TCCCCTGGCG ATTTTAAATC TGTAGAGACA ATCGCACGAA CGGTAAAAAA CAGCCGAGTG TGTGCATTAG CCAGAGCCCT TGAAAAAGAT ATCGATGCCG CAGCGCAATC TTTATCTGTG GCTGATCAGT TCCGTATTCA TACCTTTATC TCAACCTCGA CGATTCACGT TGAAAGCAAA CTAAAACGCT CTTTCGATCA AGTACTGGAG ATGGCTGTCG GTGCGGTTAA GTATGCTCGT CGCTTTACTG ATGATGTAGA GTTTTCCTGT GAAGATGCGG GGCGTACGCC AATTGATAAT TTGTGCCGTA TGGTTGAGGA GGCGATCAAG GCTGGCGCTA AGACAATTAA TATTCCTGAC ACTGTGGGCT ACACAGTGCC GAGTGAGTTT GGCGGCATCA TTGAAACCCT ATTTAACCGA GTGCCTAATA TCGATCAAGC GGTGATCTCC GTTCATTGTC ATGATGATTT GGGCCTTTCG GTCGCGAACT CAATTACCGC AGTGCAGCAA GGTGCACGTC AGATCGAGTG TACGGTTAAC GGTATTGGTG AGCGAGCGGG TAACTGTTCA CTCGAAGAGA TCGCCATGAT CTTGTCGACC CGTAAAGCAG CACTTGGACT AGAGACTGGG ATTAATGCTA AGGAGATCCA CCGTACCTCT AGCTTAGTCA GCCAACTTTG TAATATGCCT GTACAGGCTA ATAAAGCTAT CGTGGGCGCG AATGCATTTA CTCACTCATC GGGTATCCAT CAAGATGGCA TGCTGAAATC GCAAAATACC TACGAGATCA TGACACCTGA AAGTATCGGT CTTCCACGTA ACAATTTGAA TATGACATCT CGCTCTGGTC GACATGTGAT TAAGCATCGC ATGGAAGAGA TGGGCTATGG CGAGCATGAT TATGATATGG ACGTCTTGTA TGAATCTTTC TTGAAACTTG CAGATAAGAA AGGCCAAGTA TTTGATTACG ATCTTGAAGC TTTAACCTTT ATGGAAGCCC AAGCCGAAGA GGAGTCATTT TATCAACTTA AACAGTTAGT TGTGCACTCC GATTCCACAC AGGGAAATGC AACTGCCACA GTGAAGATAG AGCTTGATGG TGAGGTGGTC ACTGAGGCTG CTACAGGTAA TGGTCCTGTG GATGCCGCTT ATAATGCAAT TGCACGTGCT AGCAAGTGTG AAATTAATAT CACTAGCTAC AAGCTAAGCG CTAAAGGTGA GGGGCAAGAC GCCCTAGGTC AGGTGGATAT TGAGGCGAGT TATCAGCAGC AAAGTTTCCA CGGTGTTGGT TTAGCGACCG ATGTGGTAGA AGCGTCGGTG CAGGCGCTCA TACATGTGAT GAACCTGACA TGGCGTGCGG ATAAGGTTGC AGACTGTAAG CAAAAGATCC AGCAAAAAGC GAGATCTCTT GGTGGCGTTT AA
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Protein sequence | MSNRVIIFDT TLRDGEQALA ASLTVKEKLQ IALSLERLGV DVMEVGFPVS SPGDFKSVET IARTVKNSRV CALARALEKD IDAAAQSLSV ADQFRIHTFI STSTIHVESK LKRSFDQVLE MAVGAVKYAR RFTDDVEFSC EDAGRTPIDN LCRMVEEAIK AGAKTINIPD TVGYTVPSEF GGIIETLFNR VPNIDQAVIS VHCHDDLGLS VANSITAVQQ GARQIECTVN GIGERAGNCS LEEIAMILST RKAALGLETG INAKEIHRTS SLVSQLCNMP VQANKAIVGA NAFTHSSGIH QDGMLKSQNT YEIMTPESIG LPRNNLNMTS RSGRHVIKHR MEEMGYGEHD YDMDVLYESF LKLADKKGQV FDYDLEALTF MEAQAEEESF YQLKQLVVHS DSTQGNATAT VKIELDGEVV TEAATGNGPV DAAYNAIARA SKCEINITSY KLSAKGEGQD ALGQVDIEAS YQQQSFHGVG LATDVVEASV QALIHVMNLT WRADKVADCK QKIQQKARSL GGV
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