Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4535 |
Symbol | murD |
ID | 6118901 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5499046 |
End bp | 5500374 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641636106 |
Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
Protein accession | YP_001762880 |
Protein GI | 170728854 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00240121 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAAAATA TTAAGTCACA TGTAGTTTTA GGGCTGGGAG CAACTGGGCT TTCGGTTGTG CACTATCTGC ATGAGCAGGG GATCACTCCT TTGGTGATGG ATAGCCGTCA TCAACCTCCA GGCATGGATG AACTCAAGCG TTTATATCCA GAGGTTGAGT TGCTGACTGG CGGTTTTGAT TGTCGTTATC TCGTGCAAGC CAGTCAAATT ATTATCAGTC CTGGTATTGC CGTTGATACG CCTGAGATCC GTGCGGCTAT CGATATGGGT ATTGAAGTTA TTGGGGATGT GGAGTTATTT GCCCGAGCGG TTAAGGATAG AGAGCCCTGT GTAATAGGTA TTACCGGTTC AAATGGTAAG TCTACAGTGA CCACATTAGT TGGTGAGATG GCGAGGGTAG CAGGTCTCAA CTATGCAGTT GGTGGCAATA TCGGTGTTCC CGCACTCGAT CTGCTTAGAG AGCCAAGAGA TCTCTATATT CTAGAACTCT CTAGTTTCCA GCTCGAGACT ACGCACAGTT TAAATTGCAT CGTGGCGACC TGTCTCAATA TTAGTGAAGA TCATATGGAT CGTTACACAG ATCTTGAGGC TTACAGGCAA GCAAAACTGT CACTCTATTG CCAAAGTAAA CGTGCGCTGT TTAATCGAGA AGATGAACTG ACCGAGCCAA AAGATCCGAT GAATCAAAAT AGTTTTGGAT TGTCGGCACC ATTTAATGAT GAGTGGGGTG TTCGTGATGG CAAGGTTGTG CATGGAACAA CAGAGATCAT GAACCTGCTT GATGTTGCGC TTGTTGGTAG CCATAACCAT GCTAATCTGC TTGCCGCTAT GGCACTGGCT TATCATGCCG GAGTCGATAA AGAATCGATG ATACAGGTTG CGACGACCTT TACTGGTTTA GCACATCGAT GTGAATTGGT GGCTGTTCAT AATGGCGTCA GTTATGTCAA CGACTCTAAG GCTACTAATG TCGGCGCAAC TGTTGCTGCA CTTGAAGGGT TTAGTGATCA TCTTGGTGGC ATTATTTTAA TTGCGGGTGG AGATGGAAAA GGCGCTGATT TTCAGCCATT GCAGCAGGCT ATTCATGGGC TTTCTCAACT GATCACATTA GGAAAAGATG GCGATAAAAT TGCTGAGTTT TCTGAGAAAG CTATCCGAGT TAGCGATATG TCTGAGGCGG TAAAAACAGC GAATGAACTT GCCGAGGCTG GAGATATTGT ATTGATGTCG CCTGCTTGTG CGAGCTTAGA TATGTACAAA AACTTTATGG CTCGTGGCGA AGATTTCAGA GCAGAGGTGA ATGCATTAGC TGGAAGCTCT GATGCGTAG
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Protein sequence | MENIKSHVVL GLGATGLSVV HYLHEQGITP LVMDSRHQPP GMDELKRLYP EVELLTGGFD CRYLVQASQI IISPGIAVDT PEIRAAIDMG IEVIGDVELF ARAVKDREPC VIGITGSNGK STVTTLVGEM ARVAGLNYAV GGNIGVPALD LLREPRDLYI LELSSFQLET THSLNCIVAT CLNISEDHMD RYTDLEAYRQ AKLSLYCQSK RALFNREDEL TEPKDPMNQN SFGLSAPFND EWGVRDGKVV HGTTEIMNLL DVALVGSHNH ANLLAAMALA YHAGVDKESM IQVATTFTGL AHRCELVAVH NGVSYVNDSK ATNVGATVAA LEGFSDHLGG IILIAGGDGK GADFQPLQQA IHGLSQLITL GKDGDKIAEF SEKAIRVSDM SEAVKTANEL AEAGDIVLMS PACASLDMYK NFMARGEDFR AEVNALAGSS DA
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