| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4519 |
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| Symbol | |
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| ID | 6118875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5467516 |
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| End bp | 5468244 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641636081 |
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| Product | hypothetical protein |
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| Protein accession | YP_001762865 |
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| Protein GI | 170728839 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0217] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.13557 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGAAGAG CATACCAAAA CCGCAAAGAG TCTATGGCTA AAACTGCTGG TCAGAAGACC
AGACTTTACT CTAGATATGG TAAAGAGATA TATGTTTGCG CTAAAAATGG TGGCTTCGAC
CCCGACGGTA ACCTGCCGCT TCGTCAGATG ATCGCCAAAG CTAAGAAAGA TCAAGTTCCA
GCTCATGTGA TTGAGCGTGC CATCGACAAA GCCAAAGGCG GTGGTGGTGA AGATTATGAA
ACTGCACGCT ACGAAGGGTT CAGTCCAGGC GGCGCCATGG TTATCGTTGA CTGCTTAACA
GATAACGGTA AGCGAACTTT CACCGAAGTA CGTCAAGCGT TCGTAAAAAA TGATGCCAAA
TTAGGTGGCC CTGGTACCGT AGGCCATATG TTCGATCATC AAGCTGTTTT TGTCTTTAAA
GGTGAAGATG AAGAAGCAGT GCTAGAGATG CTTATCATGG CCGATGTTGA TGTGACTGAT
GTTGAGCTAG AAGATGGCAT GATCACGGTC TACGCTCCAC ATACAGAGTT TTACAAGACC
AAAACTGCGC TAACTGAAGA GAATTCAGAA GCGGAGTTTG AAGTTGAGGA GATCACTTTC
GTTCCTCAAA CGATGACAGA TATTACCGAT CCTGAAGTGA TTGAGCAGTT TGAAAAGTTC
CTCGCTGCCC TTGAAGATTG TGATGATGTA CAAAACGTCT ACCACAATGC AGAGCTACCT
CAAGATTAA
|
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| Protein sequence | MGRAYQNRKE SMAKTAGQKT RLYSRYGKEI YVCAKNGGFD PDGNLPLRQM IAKAKKDQVP
AHVIERAIDK AKGGGGEDYE TARYEGFSPG GAMVIVDCLT DNGKRTFTEV RQAFVKNDAK
LGGPGTVGHM FDHQAVFVFK GEDEEAVLEM LIMADVDVTD VELEDGMITV YAPHTEFYKT
KTALTEENSE AEFEVEEITF VPQTMTDITD PEVIEQFEKF LAALEDCDDV QNVYHNAELP
QD
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