Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4416 |
Symbol | |
ID | 6118771 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5350298 |
End bp | 5351206 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641635978 |
Product | MSHA biogenesis protein MshM |
Protein accession | YP_001762763 |
Protein GI | 170728737 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.620402 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTACCAGC AGCACTTTGG GTTAGCGGAG ACTCCTTTCT CCCTGACCCC TAATACACAG TTCTTTTTTG GCCTTGCGCC TCATGTTGAG GCGCTGCAAG TGTTGCAGAT GGCATTACAA ACCGGTGAAG GGTTTATTAA AGTCACTGGT GAAGTTGGTA CCGGTAAAAC CCTTATCTGC CGCAAACTTA TTAATGAGCT ACCTAAGCGA TTTCATTGCG CATATCTGCC TAACCCCTAT CTTTCACCTG CGGAGCTCAG GTGGGCCGTA GCTTTAGAGT TAGGCCTTAA ATATTCGGCC AGCATTGATC AGATGCAGCT TACGGGACTG ATACAGCAGC AGTTATTAGC GCTATCAGCC CATGGACACT CTATTGTGCT TGTACTCGAT GAGGCGCAGG CACTACCTGA CGAAAGCCTT GAGGCTTTGC GACTATTCAC CAATTTAGAG ACTGAGAGTC GTAAGTTGCT ACAAGTGGTT TTGTTTGCTC AGCCAGAGCT CGATGATCGT CTTAATTTGC ATAATTTTAG GCAGTTAAGA CAGAGGATCA CCTTTAGTTA CAAGCTAAGA GCCTTATCGG TAGATGAGGC CTGTGCTTAT GTGCAACATA GATTATCGGT AGCGGGCCGT GTCGGCGAGC CACTGTTTAT TGAAAAAGAT ATTCGGGCAT TGGCGCAGGC AGCCAGAGGG ATCCCAAGAT TGATTAATAT ATTAGCTCAC AAATCATTGC TATTAAGCTT TGGTGAAGGG GCAGAGCGTG TAAAACGCCA ACATGTCAAA GCGGCCATCA CAGATACTCA AGATGCGAAT GTTACAGGTC AGAATCGATG GTTTTGGTTT ATGGGTCTTG GTGTTACCTC ATTACTAGCT GGTTTAGGCA TTCACCTCTT TTGGGGAGCG GCTTCATGA
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Protein sequence | MYQQHFGLAE TPFSLTPNTQ FFFGLAPHVE ALQVLQMALQ TGEGFIKVTG EVGTGKTLIC RKLINELPKR FHCAYLPNPY LSPAELRWAV ALELGLKYSA SIDQMQLTGL IQQQLLALSA HGHSIVLVLD EAQALPDESL EALRLFTNLE TESRKLLQVV LFAQPELDDR LNLHNFRQLR QRITFSYKLR ALSVDEACAY VQHRLSVAGR VGEPLFIEKD IRALAQAARG IPRLINILAH KSLLLSFGEG AERVKRQHVK AAITDTQDAN VTGQNRWFWF MGLGVTSLLA GLGIHLFWGA AS
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