| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4414 |
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| Symbol | |
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| ID | 6118769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5347354 |
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| End bp | 5349111 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635976 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001762761 |
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| Protein GI | 170728735 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0327101 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAACCAA AGTTAAAGAT GCGTTTGGGT GATCTGCTGG TACAAGAGCA GATCATTAGT
GAGTCTCAGC TAACCCAAGC ACTGAGTGAG CAGAGAAATA CAGGTAAGAA GCTAGGCCGA
ACCTTAATAG ACTTAAACAG TTTATCCGAG GAGCAGTTAC TTAGGTTTCT CTCTCAGCAG
CTTAATATTC CATTTATCGA CATCAGCAGA AGGCCAATTG CAGCAGAAGT TGTTAACCTC
TTACCTGAAG TTCAGGCTCG CCGTTTTAGA GCTTTAGTTG TCGAAGATAA TGGTGAAAGT
GTATTGGTTG CCATGAGCGA TCCTGCCGAT CTACAGGCGA TGGATAACTT AGAGGTATTA
CTGACTCCTA AAGTGATGGA GATTGCCGTT GTTACAGAGC AACAGCTGCT GGACGCTTTT
GATAACCTAT ATCGTAGAAC CGATCAGATC GCCGCGATCG CTGGAAAACT TGAGGAGGAG
TATGCTGCTG ACGATCAGTT TGATCTGGCA AGCTTAACCG ATGGTGACAG TGACAATGAG
ACCACGGTTG TAAAACTGCT GCAGTCAATC TTCGAAGATG CGGTGCAGAT GAGAGCTTCG
GATATTCATA TTGAGCCTGG TGAGAAAGTA TTAAGAATAC GCCAACGTAT CGATGGTCAG
CTGCATGAGA ATATCCTGCC TGAAGCCAGC ATTGCGGCAG CGCTAGTATT AAGACTTAAA
TTGATGGCAG GTCTTGATAT CTCTGAAAAG CGTCTGCCTC AAGATGGACG CTTTCATATG
GAGATAAAGG GTCACAAAAT CGATGTACGT ATGTCGACCA TGCCTATCTA TCATGGCGAA
TCTGTTGTAA TGCGTTTATT GGATCAATCA GCAGGTCTGC TTACGTTGAA TGAAACGGGT
ATGCCGCCAG AAATCTTAGC TCGTGTTCGC AAACAGATTA AACGCCCCCA TGGTATGTTG
CTGGTGACCG GACCTACTGG TAGCGGTAAA ACAACGACAC TCTATGGCGT ACTCAGTGAG
CTCAATACTG CAGATCGTAA GATAATTACC GTAGAAGATC CTGTCGAGTA TCAGTTACCC
AGAATCAATC AGGTCCAAGT TAATCACAAG ATCGGCTTAG ATTTCTCCAA TGTATTAAGA
ACTACGTTAC GTCAAGATCC CGATATCATC ATGGTGGGTG AGATGCGTGA TCAGGAGACT
GTAGAGATAG GACTTAGGGG CGCACTCACT GGTCACTTTG TATTATCAAC CTTGCATACT
AACGATGCAG TAACCAGTGC GCTACGTCTG CTGGATATGG GAGCGGCTAG CTATCTGGTT
GCCAGTGCAT TAAGGGTGAT CATTGCCCAG CGACTCGTTA GGCGTGTTTG TCAAAACTGC
TCTAGGGAAT ATCACCTAAC TGCGCAAGAC AAAGTCTGGA TGAACTCGGT CAGTAAGCAA
GATTTCTCAC ATGCGAACTT TAAAATTGGG GCCGGTTGCC AAAGCTGTAA TGGCAGTGGT
TATCGTGGTC GTATTGGTGT ATTTGAGATA TTAGAGCTAG ATGAGGGCAT GATCGATGCG
ATGCGAACTG GAAACCCACA GGATTTTTCA CGGGCAGCAC ATGAAAGCCC TAACTTTACT
CCATTAGCTG TTTCGGCGAT GAAGTATCTA GCTGAAGGAA TGACAACCAT CGAAGAGGTC
GCCAAATTGA TTGAGGATGT GAGTGAGTCT CAAGTTGCCC TATCGACAGA TATGGCTGAA
GAGCTACCTG AGGCCTGA
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| Protein sequence | MKPKLKMRLG DLLVQEQIIS ESQLTQALSE QRNTGKKLGR TLIDLNSLSE EQLLRFLSQQ
LNIPFIDISR RPIAAEVVNL LPEVQARRFR ALVVEDNGES VLVAMSDPAD LQAMDNLEVL
LTPKVMEIAV VTEQQLLDAF DNLYRRTDQI AAIAGKLEEE YAADDQFDLA SLTDGDSDNE
TTVVKLLQSI FEDAVQMRAS DIHIEPGEKV LRIRQRIDGQ LHENILPEAS IAAALVLRLK
LMAGLDISEK RLPQDGRFHM EIKGHKIDVR MSTMPIYHGE SVVMRLLDQS AGLLTLNETG
MPPEILARVR KQIKRPHGML LVTGPTGSGK TTTLYGVLSE LNTADRKIIT VEDPVEYQLP
RINQVQVNHK IGLDFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT
NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCQNC SREYHLTAQD KVWMNSVSKQ
DFSHANFKIG AGCQSCNGSG YRGRIGVFEI LELDEGMIDA MRTGNPQDFS RAAHESPNFT
PLAVSAMKYL AEGMTTIEEV AKLIEDVSES QVALSTDMAE ELPEA
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