| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4413 |
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| Symbol | |
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| ID | 6118768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5346067 |
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| End bp | 5347287 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635975 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001762760 |
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| Protein GI | 170728734 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00834233 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGTCT ATAAATACCG TGGGCGGGAT GCACAAGGTC AACAGGTGAC AGGCGTGGTG
GATGCTGCGA CTGAGAATGC GGCTGCCGAT CAATTGATGT CACGATCTGT TATCCCCTTA
GAGCTTAATG AGAGTAAAGA GAAAGCTTCA TTTACTCTGG CAAGTTTGTT TAAAGGAAAA
GTGAGCCTTG ATGAGCTACA GATTTTCTCT AGACAGATGT ACTCACTGAC TCGCTCTGGT
ATCCCCATTT TGCGGGCGAT CGCGGGTCTG TCTGAGACGA CTCACTCTCA GAGAATGAAA
GATGCGTTAA ATGATATTTC AGAGCAGCTA ACTTCCGGTC GTCCATTATC TTCGGCAATG
AACCATCACC CAGATGTATT TGATTCACTT TTTGTCTCTA TGGTTCACGT GGGGGAGAAT
ACAGGTAAGT TAGAAGATGC CTTTATTCAA CTGTCTGGTT ACATCGAACG GGAGCAGGAG
ACGAGACGAA GAATTAAAGC TGCAATGCGC TATCCGATAT TTGTTTTGAT GGCGATCACC
TTGGCGATGG TGATCTTAAA TATCATGGTG ATCCCTAAAT TTGCAGAGAT GTTTTCTCGC
TTTGGTGCAG ATCTACCTTG GGCGACTAAG CTATTGATAG GTACATCGAA TCTATTTGTG
AACTATTGGC CTGTTATGTT GGTTGCTGCT GTTGGTACGT TTATCGGAAT TCGTTATTGG
CACAGTACCG AGAAGGGGGA GAAGCAGTGG GATAAATGGA AGCTACATAT CCCTGCAGTA
GGAAGTATTA TCGAACGCTC AACCCTATCA CGCTATTGTC GTAGTTTCTC CATGATGTTG
AGTGCTGGGG TGCCTATGAC ACAAGCTCTG AGCTTAGTTG CTGATGCGGT GGATAACGCC
TATATGCACG ATCGAATAGT GGCAATGCGG CGGGGCATAG AGTCGGGTGA CTCAATGCTA
AGAGTGTGTA ATCAGAGCCA CCTCTTTACG CCATTAGTGC TTCAAATGGT GGCTGTTGGC
GAAGAGACTG GTCAGATAGA TCAGCTGCTA AATGACGCAG CGGATTTTTA TGAAGGGGAA
GTGGATTACG ATTTGAAAAA CCTGACGGCC AAGTTAGAGC CCATTTTGAT CGGTTTCGTT
GCCGGCATAG TTTTGATATT GGCTCTGGGT ATTTACTTAC CGATGTGGGA TATGCTCAAT
GTGGTTAAAG GTGGAAACTA A
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| Protein sequence | MPVYKYRGRD AQGQQVTGVV DAATENAAAD QLMSRSVIPL ELNESKEKAS FTLASLFKGK
VSLDELQIFS RQMYSLTRSG IPILRAIAGL SETTHSQRMK DALNDISEQL TSGRPLSSAM
NHHPDVFDSL FVSMVHVGEN TGKLEDAFIQ LSGYIEREQE TRRRIKAAMR YPIFVLMAIT
LAMVILNIMV IPKFAEMFSR FGADLPWATK LLIGTSNLFV NYWPVMLVAA VGTFIGIRYW
HSTEKGEKQW DKWKLHIPAV GSIIERSTLS RYCRSFSMML SAGVPMTQAL SLVADAVDNA
YMHDRIVAMR RGIESGDSML RVCNQSHLFT PLVLQMVAVG EETGQIDQLL NDAADFYEGE
VDYDLKNLTA KLEPILIGFV AGIVLILALG IYLPMWDMLN VVKGGN
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