Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4408 |
Symbol | |
ID | 6118763 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5342752 |
End bp | 5343264 |
Gene Length | 513 bp |
Protein Length | 170 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641635970 |
Product | MSHA pilin protein MshA |
Protein accession | YP_001762755 |
Protein GI | 170728729 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00456827 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAAGAG CAAAACAGCT GGGTTTTACC TTGATTGAAT TAGTGGTGGT TATCATTATT TTAGGTCTTT TGGCGGTAAC TGCCGCGCCT AAATTTATCA ACCTTCAAAG CGATGCTAAA GCATCTACTT TAGAAGGGTT TAGAGCTGCG TTACAGGGGG CTAATACTCT GGTATTTTCA AAAGCGGCAG TTGCTGGTGA AGAGCGTATT GCAGATGCTG CTGGGTGGGC GGCTAATACG GGTAATACCG CGGGCGTCGA TATTGGTACG GGCACACCGA TACAAACTGT ATATGGTTAC CTGCCTGAAG ATGCAGCTGT TATAGGAGCT GCAATGGATG TGGACTCTAG TGAGTGGGTG GCCACCGCGG TTCCGGGAGG GGGCTTGGCG TTTAGTCCCC AAGGTGCGCC AGCCGATACC TGTAATTTTG TTTATGTGGA AGCGACATCT ACAACCGAGC CAACCTATAC ACTCTATACC CCAGTAGGAG CTCAAGACCC CTTCGCCTGT TAA
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Protein sequence | MRRAKQLGFT LIELVVVIII LGLLAVTAAP KFINLQSDAK ASTLEGFRAA LQGANTLVFS KAAVAGEERI ADAAGWAANT GNTAGVDIGT GTPIQTVYGY LPEDAAVIGA AMDVDSSEWV ATAVPGGGLA FSPQGAPADT CNFVYVEATS TTEPTYTLYT PVGAQDPFAC
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