| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4320 |
|---|
| Symbol | |
|---|
| ID | 6118675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5226989 |
|---|
| End bp | 5227534 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641635883 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001762668 |
|---|
| Protein GI | 170728642 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1476] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.810122 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAACC CCATCAATGA AGGTATCAAA CGGCTTCGGG CTCAACATAA ACTGACTCAA
ATAGAGTTAG CTGAGATGGC GGGGATCCCC AGAGCGACTT TGGCGAATAT GGAGAGTAGT
AATAGTAACC CAAGTATCAG TGTGGTGATG AAAGTTGCGC AAGCATTAGG CGTAACAGTG
GACGACCTCA TTACTCAGCG CCAATCAGTG CATGTAACCA AAGTTGAGCG TAAGGATATG
CCCGTCTCCC ATCAAGATGA GGGCAAATTT ATCAGTACTC GCACTAGCCC TATCAGCACG
CAAAATTTAC AGATTAGCGA CGTGATCATG ATGCCGGGAT GTAACACTAA GGGCGTACCA
CATCCAGAGG GTAGCCATGA ACTGTTTCTC TGTTTGGATG GCACGGCCAC ATTGGAGGTT
CAGGGAGAGC TATTTGAGAT AGAGGCCGGA AACCTCACCT ACTTTAAAGG TCACCTTCCT
CACCAATATG GCAATGCCAG CCTCAAACCA GTCCATGCGA TCGTGGTGGT ATTTATGCAA
AAATAA
|
|---|
| Protein sequence | MANPINEGIK RLRAQHKLTQ IELAEMAGIP RATLANMESS NSNPSISVVM KVAQALGVTV
DDLITQRQSV HVTKVERKDM PVSHQDEGKF ISTRTSPIST QNLQISDVIM MPGCNTKGVP
HPEGSHELFL CLDGTATLEV QGELFEIEAG NLTYFKGHLP HQYGNASLKP VHAIVVVFMQ
K
|
|---|
| |