| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4257 |
|---|
| Symbol | |
|---|
| ID | 6118612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5158500 |
|---|
| End bp | 5160410 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641635823 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001762608 |
|---|
| Protein GI | 170728582 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00173192 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000137041 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAGCA AAAAACTTAT CGGCCTCAGT GTGCTAATGA CACTAGTTGG CTGTAGCAAT
GAAGAATCAA CACCGACAAA TGAGCTAACA GCTCCCAAAG TAAAGGTCGC CTCTACTCAA
ACCGACGCGT CAAAGCGGGC CAACATAGAT GTTAAAGTCA CCCAATTGAC CCAAGACTAC
ATCCGTTCGC AGCCCGCTTT AGCTACCTCT TTAAATCTTA GCCCTGAGAT TGCAGGGGAT
TTTCAGCGCA AGCTTCCCGA CTTCTCCTCT GCAGGTATGA AACAGTTGCA GTTAAAGATG
AGACAAGCCG CAGCGCAACT TGCAACCATT GATAGAGAAG GGCTTTCTGA AGCAGATAAA
CGCCACGTAG ACGTCAATGA GGTCATCGCC AATTATTACG CTGGTGATAA TCAATTTGAT
GCGGGTTATA TCGATGTCTG GGCTGGACAC CTGCCCTATA TCGTCAATCA GATTAACGGA
CCACTGATCG ACACTCCCAC CACATTGATT GATCAACAAG CCATTTTAAA CCTAAATGAT
GCCGAGGATT ACCTAGAGCG ATTAACGGCA TTGGCAACGA TGACACTTCA AGTAAAAGCA
AAAGTTGAAG CCGATGCCGC TAAAGGGGTG ATCCTGCCAA AACCACTCTT TGCTAACACG
CTGAAGTTTT TCGCCAACTT CACACAAAAG CCAGCCAGTG ATCACCCATT GGTTAGCAGC
TTCGAAGAGA AGCTTAACTC AATTGACACT TTAGATGAGA AGCAGCGACA GAAGTTGACT
GCTCAGGCTG CAAAGGCCAT TGAAGAACAG GTTTATCCAG CTTATCGAGA GGTAAGTGAG
CTAATGACCC GTTTAGAGCC CAAGGCTCCA ACAGATGTGG GAATATGGGC GCAACCTAAC
GGTGAGCGCT TCTATCAACA TGGCATCACC TATCTGGCAG ACTCTAACTT GAGCGCCGAT
GAGATCCATC AACTAGGTGT AGCAGAAGTA ACCCGCATTA CCCAAGAGAT GGACAGCATC
TTAAAAGCCA ACGGCTATAG CGAGGGAAGT GTTGGGATGC GTATGGTAAA ACTGAGCAGC
GAGCCCCGCT TTCTCTATGA AAACTCAGAT GAGGGCCGTA AACAGCTACT TAGCGATCTC
AGCCGTGATA TCGACACCGT AATGGAGAAA GCCCCACAAC TCTTCTCTAC CTTGCCCCCA
CAAAAGGTTG TGGTTAAGCG CGTTCCTGTT GAGGTCGAAG CTGGTGCTGC TGGAGGCGCT
TACGTACCTC CAGCTCTTGA TGGAAGTCGT GATGGTGTTT ACCTAATTAA CCTAAAGGAT
ATGACCTCAA TCGCTAAGTT CGACCTAAAA ACCTTAACCT ATCACGAAGC GGTTCCTGGC
CATCACTTCC AGATAGCCCT TAACATGCTG CAAACCGATA TCGGCTTAAT GCGTCAAAAC
GCTTCCTTCA ATGGCTACAT TGAGGGCTGG GCACTCTACT CTGAACTACT CGCCTATGAG
ATGGGGATGT ATGAGGGAGA TCCATGGGGA GATCTAGGTC GACTAAAAGC TGAGGCCTAC
CGCGCAGCTA GATTAGTTGT CGATACTGGC CTGCACCATA AAAAATGGAC GCGCCAACAA
GCCATTGAAT ACTTTGCCGA AGCAACTGGC TCAACTCAAG CTAATGTCAC AAGCGCAATC
GACCGTTATA TCGCTTGGCC AGCGCAAGCC CTAGGTTATA AGTTGGGAAT GATTAAGCTG
GTTGAACTCA GAGCGAAAGC TCAACAGGCG ATGGGTGAGC AGTTCGATAT CCGTCAATTT
CATGATCTGA TACTGCTCCC AGGTGCTCGC TCTATCAGCA TGGTTGAAGC CGATATCAAC
CGCTGGATTG AGCAGCACAC ACAAACTACC AGCCTCAACA ATATTCAATA A
|
|---|
| Protein sequence | MFSKKLIGLS VLMTLVGCSN EESTPTNELT APKVKVASTQ TDASKRANID VKVTQLTQDY
IRSQPALATS LNLSPEIAGD FQRKLPDFSS AGMKQLQLKM RQAAAQLATI DREGLSEADK
RHVDVNEVIA NYYAGDNQFD AGYIDVWAGH LPYIVNQING PLIDTPTTLI DQQAILNLND
AEDYLERLTA LATMTLQVKA KVEADAAKGV ILPKPLFANT LKFFANFTQK PASDHPLVSS
FEEKLNSIDT LDEKQRQKLT AQAAKAIEEQ VYPAYREVSE LMTRLEPKAP TDVGIWAQPN
GERFYQHGIT YLADSNLSAD EIHQLGVAEV TRITQEMDSI LKANGYSEGS VGMRMVKLSS
EPRFLYENSD EGRKQLLSDL SRDIDTVMEK APQLFSTLPP QKVVVKRVPV EVEAGAAGGA
YVPPALDGSR DGVYLINLKD MTSIAKFDLK TLTYHEAVPG HHFQIALNML QTDIGLMRQN
ASFNGYIEGW ALYSELLAYE MGMYEGDPWG DLGRLKAEAY RAARLVVDTG LHHKKWTRQQ
AIEYFAEATG STQANVTSAI DRYIAWPAQA LGYKLGMIKL VELRAKAQQA MGEQFDIRQF
HDLILLPGAR SISMVEADIN RWIEQHTQTT SLNNIQ
|
|---|
| |