| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4240 |
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| Symbol | |
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| ID | 6118595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 5141283 |
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| End bp | 5142764 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635806 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001762591 |
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| Protein GI | 170728565 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000026352 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGCGT CACTCCAGCT CAAAATGGGT CAGCACTTAA CCATGACTCC CCAGCTTCAA
CAGGCGATAC GTCTGCTGCA GCTGTCGTCA CTGGAACTGC AACAGGAGAT CCAACAAGCA
TTAGATTCCA ATCCATTACT GGAGTTGGAC GAAGAGCAAG TTGATGCTAA CGCTGACAAT
AGCGATGTCA AAAACAACAG CGAAACAGAC TTCAGTGCTT CTGTCGAGAA AGAGGCCGAT
AAAGACAGCT CGTCACTAGA AACATCCGAC GCACTGAATC AAGATTCCAT GCCTGAAGAC
CTTCCTGTCG ACACCACTTG GGATGAGGTC TACACCGCAA CACCAAACTC AAGCTCTGGC
GCGATGCGAG ATGATGACCT TCCCTTCCAA GGCGAAACCT GTGAAGGTCT ATATGAGCAC
CTAGAGTGGC AAAAAAACTT AACCCCATTT TCTGATAATG ACTTAGCCAT CGCGACAGCC
ATTATTGATG CGATCGATGA GCGTGGCTAC CTCACGCAAA GTACCGATGA TATCTTAGAA
GCCATGGGCG ATCCTGAGAT AGAGCTCGAT GAAGTTGAAG CGGTGCTTAA GCGTGTTCAG
CACTTTGATC CTATCGGTGT TGCAGCCCGT GACCTCAGTG AATGCCTGTT TATACAGCTA
GCTCAATATG CCAACACAAC ACCTCATATC GACAATGCCC GATTACTGAT TAAAGAGCAC
CTTGATCTAA TTGCAGGCCG TGACTTCCGC CTCTTAATGC GTAAAACCAA ACTTAAAGAG
GATGATTTAA GGCAAGCCAT TGAACTGATT CAAACCCTAA ATCCACGTCC TGGACTGGCC
ATCAACCCAA GTCGGGATGA GTATGTTATT CCAGATGTCA CTGTGATTAA AAAGAAAGGG
CGCTGGATTG TTGAACTCAA CCCAGACTAC ATGCCAAAAA TTAATGTGAA TCAGCATTAC
GCTTCCATGG CTCGCAGCAC GAAAAACCAA GCTGACAGTC AATTTATCCG TGGGCATTTG
CAGGAAGCTA AGTGGTTTAT CAAGAGCTTA GAGAGTCGTA ACGATACTCT TTTAAAGGTC
TCAAATTGCA TCGTCAAGTT TCAACAAGGC TTCTTCGAAT ATGGTGAAGA GGCGATGAAA
CCTATGGTGC TAAATGACAT AGCTGAAGAA GTTGAGATGC ATGAATCGAC CATCTCCCGT
GTCACAACCC AAAAATATAT GCATACCCCA AGAGGCATAT TTGAGCTGAA ATATTTCTTC
TCCAGCCATG TGGGTACCGA CGATGGCGGT GAGTGTTCAT CAACAGCTAT CCGCGCCTTC
ATTAAAAAGT TAGTGGCGGC AGAGAACCAA CAAAAGCCTC TCAGTGATAG CAAGATGGCC
CTTCTTCTTG CAGAGCAGGG CATTAAGGTG GCGAGACGAA CCATAGCCAA GTACCGTGAG
GCCATGTTGA TCCCGCCATC GAATCAAAGA AAGAGTTTAT AA
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| Protein sequence | MKASLQLKMG QHLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELD EEQVDANADN
SDVKNNSETD FSASVEKEAD KDSSSLETSD ALNQDSMPED LPVDTTWDEV YTATPNSSSG
AMRDDDLPFQ GETCEGLYEH LEWQKNLTPF SDNDLAIATA IIDAIDERGY LTQSTDDILE
AMGDPEIELD EVEAVLKRVQ HFDPIGVAAR DLSECLFIQL AQYANTTPHI DNARLLIKEH
LDLIAGRDFR LLMRKTKLKE DDLRQAIELI QTLNPRPGLA INPSRDEYVI PDVTVIKKKG
RWIVELNPDY MPKINVNQHY ASMARSTKNQ ADSQFIRGHL QEAKWFIKSL ESRNDTLLKV
SNCIVKFQQG FFEYGEEAMK PMVLNDIAEE VEMHESTISR VTTQKYMHTP RGIFELKYFF
SSHVGTDDGG ECSSTAIRAF IKKLVAAENQ QKPLSDSKMA LLLAEQGIKV ARRTIAKYRE
AMLIPPSNQR KSL
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