| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4180 |
|---|
| Symbol | psd |
|---|
| ID | 6118535 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5082959 |
|---|
| End bp | 5083822 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641635746 |
|---|
| Product | phosphatidylserine decarboxylase |
|---|
| Protein accession | YP_001762531 |
|---|
| Protein GI | 170728505 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0688] Phosphatidylserine decarboxylase |
|---|
| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATAAAA TAAAAATCGC GCTGCAGTAT ATGATGCCTA AACATTTAAT CTCACGCCTT
GTTGGTAAAC TAGCAGCGGC AGAGATGGGA AGTGTCACCA CAGCAGCAAT CAAGTGGTTT
ATTAAACAAT ACAAAATAGA TATGAGTGAA GCGGCTCAAA GCTCACCAGA GGCGTACAGC
ACGTTTAATG ACTTCTTCAC CCGCGCTCTT AAGCCGGGCA TCCGCCCTAT TTCAGATAAA
AAAGACTACA TAGTTCACCC TGTTGATGGT GCTGTGAGCC AATGTGGTCC GATAAAACAT
GGACAGATAT TTCAAGCTAA AGGACATGAA TATTCATCAC TTGCGCTTTT AGGCGATCGA
GCTGATGATG CAAAACGGTT CGAAGATGGT GACTTTGCAA CTATCTATCT GGCACCGAAG
GATTACCACA GAATTCATAT GCCAATTAAA GGAACCTTGT CAAAAATGAC CTATGTTCCT
GGCGAACTGT TTTCAGTCAA CCCGCTAACA GCGGAAAACG TTCCTGGTCT ATTTGCTAGA
AACGAGCGCG TCGTGGCAAT CTTCGAAACC GAGATAGGTC CAATGGCGAT GGTATTAGTT
GGTGCAACAA TCGTTGCCAG CATAGAAACT ATTTGGGCAG GCACAGTTAC ACCGCCAACA
GGTAAGAAAG TATTTACTTG GGATTATCCA ACCGAAGGAC CTGCTGCACT TACCTTAGAC
AAAGGTGCAG AGATGGGCCG ATTTAAGTTA GGTAGTACGG TTGTCATGCT ATTTGCCAAA
GATGCTTTAG ATGACTTTGC TGATGATGTC ACTCCGAAAG CCGTCACACG TATGGGACAG
CCTTTCGCAA AAATCGAAGA TTAA
|
|---|
| Protein sequence | MDKIKIALQY MMPKHLISRL VGKLAAAEMG SVTTAAIKWF IKQYKIDMSE AAQSSPEAYS
TFNDFFTRAL KPGIRPISDK KDYIVHPVDG AVSQCGPIKH GQIFQAKGHE YSSLALLGDR
ADDAKRFEDG DFATIYLAPK DYHRIHMPIK GTLSKMTYVP GELFSVNPLT AENVPGLFAR
NERVVAIFET EIGPMAMVLV GATIVASIET IWAGTVTPPT GKKVFTWDYP TEGPAALTLD
KGAEMGRFKL GSTVVMLFAK DALDDFADDV TPKAVTRMGQ PFAKIED
|
|---|
| |