| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4079 |
|---|
| Symbol | |
|---|
| ID | 6118429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4950295 |
|---|
| End bp | 4951125 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641635640 |
|---|
| Product | periplasmic binding protein |
|---|
| Protein accession | YP_001762430 |
|---|
| Protein GI | 170728404 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000203821 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.165112 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACATA GTGTAAAAAG GCTGCTTGTG GCCATGGTCT GTTTTTTATC TGTTTCTGTG
GCGGTTGCAG CGCCGGCGAA ACGTGTGATT GCTTTATCAC CTCATTCGGT GGAGATGCTC
TATGCCATAG GTGCGGGTGA GACGATTGTA GCCACCACAG ATCATGCTGA CTTTCCTGCA
GCTGCACTTG ATATCCCACG TATTGGCGGC TATCACGGGG TTCAAATTGA ACGTGTGATT
GAGCTTAACC CTGATCTGGT TCTGGTGTGG GGTAGTGGCA ATAAAGCAGA GGATATTGAT
CGGATTAAGA GCTTAGGGTT TAAGGTATTT GATAGCGACC CTAAGACACT GGAGGCGGTA
GCCGACGAGC TCAAAGCCTT GGGTGAGTTG ACCGGAAATA AGGCGCAAGC TAATAGGGTT
GGTGATGAGT ACCTTACTCA GCTGGCTAAG CTACGCAAGG ACAACTTAGC TAAGCAGAAG
GTAAAAGTGT TCTATCAACT CTGGTCTACC CCCTTGATGA CAGTGGCTAA AAATAGCTGG
ATCCAACAGA TCATCGATGT TTGCCATGGT GATAATGTCT ATATTGATGC TGCCAGTGAT
TACCCCCAGG TGAGCCTTGA GAGTGTATTG CTTAAGATGC CAGAAGTGAT CCTACAGAGC
CAAGATGAGG GCAATGTGCT AGGTGTTGAC TGGAACAAGT GGCAGGAGAT CCCTGCGGTG
AAACAGCAAC ATATCTACCA GCTTAATGCC GATCTTTTAC ATAGGGCGGC GCCTAGGGCA
CTATTAGGGG TTAATGCGCT GTGTGAAGCT TTAGATAAAG CGAGAAAATA A
|
|---|
| Protein sequence | MQHSVKRLLV AMVCFLSVSV AVAAPAKRVI ALSPHSVEML YAIGAGETIV ATTDHADFPA
AALDIPRIGG YHGVQIERVI ELNPDLVLVW GSGNKAEDID RIKSLGFKVF DSDPKTLEAV
ADELKALGEL TGNKAQANRV GDEYLTQLAK LRKDNLAKQK VKVFYQLWST PLMTVAKNSW
IQQIIDVCHG DNVYIDAASD YPQVSLESVL LKMPEVILQS QDEGNVLGVD WNKWQEIPAV
KQQHIYQLNA DLLHRAAPRA LLGVNALCEA LDKARK
|
|---|
| |